Abstract Browser (by Title)

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IDTitleSection/TopicAuthorsKeywords
9762,4-Diacetylphloroglucinol, an Antibiotic Produced by Biocontrol Bacteria, Alters Plant Root Development
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Plant-Symbiont InteractionsBrazelton, Jessica N.; Coenen, Catharina; McSpadden Gardener, Brian B..auxin
2,4-diacetylphloroglucinol (DAPG)
Pseudomonas fluorescens
21243’UTR mediated transcript turnover may be a general regulatory step in the expression of some isoforms of cytoplasmic glutamine synthetase in legumes.
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Mechanisms of Gene RegulationVasudevan Simon, Bindu; Ortega, Jose Luis; Bagga, Suman; Sengupta-Gopalan, Champa.Glutamine synthetase
5163’UTR Profiling: Resolution of Differential Expression by Closely-Related Transcripts and Identification of Novel Sequences
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Emerging TechnologiesEveland, Andrea L; Kirst, Matias; Latshaw, Susan P; Avigne, W.T.; McCarty, Donald R; Koch, Karen E.454
ABA
3'UTR
167613C labeling studies to trace carbon partitioning into cell wall structural carbohydrates in Switchgrass
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Bio-Energy CropsSoundararajan, Madhavan; Nemecek, Branden; Sarath, Gautam.switchgrass
1809A 1.2 kb deletion in the 5' region of the β-amylase gene is responsible for the reduced β-amylase activity in soybean cultivar Altona sp1
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Seed BiologyKim, Won-Seok; Krishnan, Hari B..beta-amylase
Soybean
865ABA inhibits PCD during vascular element differentiation?
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Growth and Vegetative DevelopmentYaroch, Samantha; Flannery, Ellen; Dannenhoffer, Joanne.phloem
sieve element
73A biochemical analysis of truncated auxin conjugate hydrolases in Medicago truncatula
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Hormone BiologyCampanella, James J.; Sigethy, Scott; Ludwig-Müller, Jutta.auxin conjugate hydrolase
Medicago truncatula
truncated protein study
auxin regulation
protein conformation
372A Bioinformatics Approach for the Identification of Chloroplast Proteases that Play a Role in Senescence
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Organelle BiologyBelanger, Eileen; Flores, Daisy; Kimoto, Maryann; Belletto, John; Hoiness, Robert; Alvaro, Bethel; Brusslan, Judy.bioinformatics
senescence
Chloroplast
chloroplast protease
1655Abiotic stresses differentially affect flowering of Arabidopsis thaliana and Chenopodium rubrum
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Reproductive DevelopmentKolar, Jan; Matejickova, Lada; Senkova, Jana.flowering
stress
Arabidopsis thaliana
Chenopodium rubrum
185Abscisic Acid rescues the root meristem defect of M. truncatula latd mutants
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Growth and Vegetative DevelopmentHarris, Jeanne M.; Liang, Yan.root apical meristem
nodule
Medicago truncatula
Abscisic Acid
legume
lateral root
2210A candidate assembly of mitochondrial complex I (amc1) mutant in the green alga Chlamydomonas reinhardtii
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Organelle BiologyBarbieri, Rosario; Remacle, Claire; Hamel, Patrice.mitochondrial Complex I
Chlamydomonas reinhardtii
assembly mutant
mitochondrial electron transport
NADH: dehydrogenase
236Accentuate the positive: interactions between opposing regulators control stomatal pattern in Arabidopsis
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Growth and Vegetative DevelopmentBergmann, Dominique; Dong, Juan; Lampard, Gregory; Liu, Tie; MacAlister, Cora.stomata
bHLH transcription factor
asymmetric cell division
guard cell
epidermis
cell-cell signaling
1829Acc homoeoloci and evolution of the wheat genomes
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Genome EvolutionChalupska, Dominika; Lee, Hyo Y.; Haselkorn, Robert; Gornicki, Piotr.wheat
evolution
genome
279Acclimated stress responses of the transgenic tobacco plants expressing mtlD gene in constitutive and stress inducible fashion under various abiotic stresses
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Water RelationsRamanna, Hema; Muthappa, Senthil-Kumar; Reddy, Chandrasekhara; Makarala, Udayakumar.mtld
94Acclimation of canopy photosynthesis to long term CO2 enrichment: relationship between leaf nitrogen and ribulose-1,5-bisphosphate carboxylase/oxygenase concentrations
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Photosynthesis(Carbon)Seneweera, Saman; Makino, Amane; Mae, Tadahiko.rice
elevated co2
Photosynthesis
acclimation
rubisco
sucrose
270A Central Role for Plants in the “Reinventing Life” Curriculum
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Education & OutreachCoker, Jeffrey Scott.education
undergraduate
curriculum
genetic engineering
evolution
1535A Chemical Genetics Approach for Dissection of Abscisic Acid Signaling Network
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Hormone BiologyKim, Tae-Houn; Dizon, Marie; Boisson-Dernier, Aurélien; Schroeder, Julian.ABA
chemical genetics
2661A citrus sucrose synthase (CsSUS01) gene promoter contains elements directing tissue specific expression and response to abiotic stress
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Metabolic EngineeringBausher, Michael.
756A Closer Look at Thorn Development: Determining Morphology and Gene Expression in Rubus Thorns
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Growth and Vegetative DevelopmentKellogg, Allicia A.; Haas, Jordan D.; Swanson, John-David.
2183A computational method for automatic quantification of seedling photomorphogenesis phenotypes based on principal components analysis
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PhotomorphogenesisWang, Liya; Spalding, Edgar; Assadi, Amir.hypocotyl
hook opening
apical hook
blue light
photomorphogenesis
automatic measurement
2078A Computer Vision Based QTL Analysis of Arabidopsis Seed Morphology and Color
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Seed BiologyMoore, Candace Randall; Miller, Nathan D.; Vaughn, Laura M.; Spalding, Edgar; Masson, Patrick H..QTL
computer vision
Seed
2675Activation of the Arabidopsis Protein Kinase SnRK1 by GRIK1 and GRIK2
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Plant-Pathogen InteractionsShen, Wei; Reyes, Maria; Hanley-Bowdoin, Linda.protein kinase
Geminivirus
Snf1
SnRK1
2579Activation tagging approach in a medical fungi, Antrodia cinnamomea
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Education & OutreachTsay, Hsin-Sheng; Chen, Chin-Fun; Chen, Chien-Fu.Activation Tagging
Antrodia cinnamomea
499A dominant HSP101 mutation is suppressed by mutations in an MTERF-related protein
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Temperature ResponsesKim, Minsoo; Lee, Ung; Vierling, Elizabeth.Chaperone
AAA protein
heat stress
mterf
418AFLP marker-assisted rationalization of Indian tea germplasm collections
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Plant biotech & Risk AssessmentSharma, R. K.; Negi, M. S.; Bhardwaj, P.; Sehagal, D.; Negi, R.; Tewari, M.; Tripathi, S. B.; Banik, J.; Karthigeyan, S.; Vijayan, D.; Chowdhury, B. R.; Bera, B.; Das, S. C.; RajKumar, R.; Mandal, A.K.A; Sen Mandi, S.; Murleedharan, N.; Hazarika, M.; Raina, S. N.; Ahuja, P. S..AFLP
Camellia sinensis
Genetic diversity
Tea accessions
787A genetic approach towards elucidating singlet oxygen-mediated signaling in Arabidopsis thaliana
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Oxidative StressSimkova, Klara; Baruah, Aiswarya; Laloi, Christophe; Apel, Klaus.Arabidopsis
reactive oxygen species
singlet oxygen
flu
Signal transduction
859A genetic framework for flower development in Citrus spp
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Reproductive DevelopmentDornelas, Marcelo C.; Camargo, Raquel L. B.; Takita, Marco A.; Carmello-Guerreiro, Sandra; Machado, Marcos A..Citrus
flowering pathways
MADs box genes
CONSTANS genes
data mining
EST
Functional genomics
398A Genomic and Real Time View of Regenerating Tissue
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Growth and Vegetative DevelopmentSena, Giovanni; Wang, Xiaoning; Birnbaum, Kenneth.genomics
regeneration
developmental imaging
1671AINTEGUMENTA and REVOLUTA are Involved in Apical-Basal Patterning of the Gynoecium in Arabidopsis thaliana
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Reproductive DevelopmentNole-Wilson, Staci; Azhakanandam, Sridevi; Franks, Robert G..AINTEGUMENTA
REVOLUTA
gynoecium
1471A Laboratory Exercise for Introductory Cell Biology Classes: Examining the Antioxidant Enzymatic System and its Responses to Stress
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Education & OutreachDeBruhl, Mary Carolyn; Erturk, H. Neval.plant cell biology
bioinformatics
undergraduate lab
448A leucine rich repeat receptor-like kinase has a role in nodule morphogenesis in Phaseolus vulgaris
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Plant-Symbiont InteractionsJauregui, David; Nava, Noreide; Alvarado, X; Santana, O; Quinto, Carmen.receptor kinase
nodulation
Symbiosis
1681A little time goes a long way: How plant biologists can use short outreach activities to enhance science teaching and learning in K-12 classrooms
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Education & OutreachDechaine, Jennifer M; Whittinghill, Kyle; van Vleck, Harriet E; Faber, Nick; Gabrych, Jennie; Huneke, Joan.education
K-12
outreach
1438Allelochemical stress and abscisic acid in Lycopersicon esculentum Mill
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Environmental PhysiologyLara-Núñez, Aurora; Anaya, Ana Luisa; Cruz-Ortega, Rocio.ABA, allelochemical stress, Sicyos deppei, Lycopersicon esculentum, mycropilar endosperm, cell cycle
2029Allopolyploidy generates novel photosynthesis-related phenotypes in wild relatives of soybean (Glycine subgenus Glycine)
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Evolution of Development and PhysiologyCoate, Jeremy E.; Maureira Butler, Ivan J.; Owens, Thomas G.; Doyle, Jeff J..Allopolyploidy
Photosynthesis
Glycine
1347Alteration of amounts of plastid genes in a tobacco (Nicotiana tobacco L. cv. BY-4) albino mutant
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Photosynthesis(Light)Bae, Chang-Hyu; Abe, Tomoko.Mutant analysis
albino
374Alteration of Iron Use efficiency by yellow stripe1- like (OsYSL) genes in rice
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Mineral NutritionLee, Sichul; An, Gynheung.rice iron nutrition
OsYSL
457Altered auxin transport and root development in the scd1 mutant
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Protein Targeting and Vesicular TraffickingMetcalf, Kasee; Falbel, Tanya; Muday, Gloria K.auxin
lateral root
PIN proteins
Rab
415Aminopeptidase M1 (APM1) plays a role in development in Arabidopsis
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Integrative Plant PhysiologyBandyopadhyay, Anindita; Titapiwatanakun, Boosaree; Hosein, Fazeeda; Blakeslee, Joshua; Makam, Srinivas; Peer, Wendy; Murphy, Angus.trafficking
Auxin transport
aminopeptidase M1 (APM1)
development
1100A mobile RNA exhibits light-activated transcription
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Cell-to-Cell and Long Distance SignalingChatterjee, Mithu; Banerjee, Anjan, K; Hannapel, David,J.
1938A molecular analysis of plant response to long-term changes in water availability in an annual grassland
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Global ChangeBernard, Stephanie M; StClair, Sam; Placella, Sarah; Salve, Rohit; Brodie, Eoin L; Firestone, Mary K; Torn, Margaret S; Ackerly, David D.; Andersen, Gary L.Nitrogen
Avena barbata
climate change
518A molecular explanation of why C4 photosynthesis in Miscanthus, but not maize, can acclimatize to chilling conditions
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Photosynthesis(Carbon)Wang, Dafu; Portis, Archie R; Moose, Stephen P; Long, Stephen P..Miscanthus x giganteus
Photosynthesis
PPDK
rubisco
2490A mutation in subunit RPN5a of the regulatory particle of the proteasome affects cell division along the shoot-root axis during Arabidopsis embryogenesis
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Reproductive DevelopmentRusso, Laura A.; Verhoeven, Elizabeth C.; Barton, M. Kathryn; Jenik, Pablo D..embryogenesis
26S Proteasome
cell division
2211A Mutation in Translocon of Outer Membrane of Chloroplasts 132 (Toc132) Enhances Gravitropic Defect of altered response to gravity 1 (arg1)
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TropismsStanga, John; Boonsirichai, Kanokporn; Sedbrook, John; Masson, Patrick H..gravitropism
1370An Agrobacterium-infiltration transient expression assay adopted for Phaseolus vulgaris L
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Plant-Pathogen InteractionsChan, John; Perry, Greg; Pauls, K. Peter.Agrobacterium
infiltration
Phaseolus
BiBAC
GUS
GFP
transient expression
144Analysis of an auto-active Hcr9 disease resistance protein reveals residues responsible for activation, repression and enhancement of signalling activity
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Plant-Pathogen InteractionsAnderson (nee Barker), Claire.auto-active
disease resistance protein
leucine-rich repeat
2304Analysis of an epigenetic suppressor of the Arabidopsis twisted dwarf1 (twd1) mutation
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EpigeneticsMoeller, Claudia; Wanke, Dierk; Harter, Klaus; Dilkes, Brian; Feldmann, Ken; Schulz, Burkhard.epigenetic
twisted dwarf1
suppressor mutant
transcriptional regulation
1880Analysis of an ortholog and paralogs of regA, a cell-type regulator in Volvox carteri f. nagariensis
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Evolution of Development and PhysiologyHoward, Alicia D.; Duncan, Leonard; Buckley, Stephanie; Miller, Stephen M..green algae
differentiation
SAND domain
Volovx
1579Analysis of Arabidopsis thaliana that was suppressed PEX10 gene expression
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Organelle BiologyKamigaki, Akane; Hayashi, Makoto; Mikio, Nishimura.peroxisomes
peroxin
224Analysis of Developing Seed Transcriptomes of Rice Using Massively Parallel Signature Sequencing
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Seed BiologySreerekha, MV; Venu, RC; Nobuta, Kan; Meyers, Blake; Wang, Guo-liang.MPSS
Developing seed
Milling
Taste
997Analysis of GeneChip hybridization results for RNA isolated from root pieces colonized by soybean cyst nematode, Heterodera glycines
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Plant-Pathogen InteractionsTucker, Mark; Puthoff, David; Vinyard, Bryan; Ehrenfried, Mindy.Affymetrix
soybean cyst nematode
microarray
Soybean
Gycine max
Heterodera glycines
2041Analysis of Green Light Effects on Arabidopsis Photomorphogenic Mutants
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PhotomorphogenesisTaylor, James; Folta, Kevin M..Arabidopsis
photomorphogenesis
778Analysis of host and viral DNA replication components in plants
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Plant-Pathogen InteractionsLawrence, Leslie; Settlage, Sharon; Hanley-Bowdoin, Linda.plant-virus interaction
1310Analysis of micro RNAs in flower development of Eucalyptus
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Non-Coding RNAsKato, Tomohiko; Asamizu, Erika; Kaneko, Takakazu; Tabata, Satoshi; Hibino, Takashi.miRNA
Eucalyptus
2113Analysis of O-GlcNAc modification GIGANTEA
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Protein Modification and TurnoverHartweck, Lynn M; Oldenhof, Harriette; Olszewski, Neil E.Post Translational Modification
circadian
flowering
1315Analysis of OsPI1, Rice Non-coding RNA Responsible for Phosphate Deprivation
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Mineral NutritionNishiyama, Tomo; Choi, Sang Ja; Shinano, Takuro; Koyama, Hiroyuki; Ito, Susumu; Wasaki, Jun; Osaki, Mitsuru.phosphorus deficiency
non-coding RNA
TPSI1/Mt4 family
1019Analysis of Phytoalexins by High Performance Liquid Chromatography-Mass Spectrometry (HPLC-MS) following Induction in Nerium oleander
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Plant-Pathogen InteractionsEltayeb, Elsadig; Al Barwani, Fatma; Al Sabri, Iman; Khan, Tabisam.Phytoalexins
Nerium oleander
Genistein
461Analysis of Several Traits of Seeds in Micpo-endosperm Corn
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Seed BiologyWu, Zikai.structural biology
Micro-endosperm
Corn
2168Analysis of sRNAome in Populus trichocarpa using pyrosequencing
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Non-Coding RNAsBarakat, Abdelali; Wall, P. Kerr; DiLoreto, D. Scott; dePamphilis, Claude W.; Carlson, John.sRNA
microRNA
Populus

pyrosequencing
396Analysis of the Arabidopsis thaliana SON1 F-Box Protein and Putative Substrates
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Protein Modification and TurnoverSt. Pierre, Benoit; Argueso, Cristiana; Heim, John; Matthews, Dwight E.; Delaney, Terrence P..protein degradation
F-Box protein
SAR
449Analysis of the expression of key polyamine biosynthetic genes in Arabidopsis
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Mechanisms of Gene RegulationMajumdar, Rajtilak; Mitchell, Jeff; Sanders, Scott; Minocha, Subhash.polyamine
1387Analysis of the sub-cellular localization and dynamics of the flavonoid multi-enzyme complex in Arabidopsis thaliana
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Secondary MetabolismCrosby, Kevin C.; Winkel, Brenda S. J..multi-enzyme complex
flavonoid
Immunolocalization
1623Analysis of transposon mobility and identification of additional gls genes in Volvox carteri
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Growth and Vegetative DevelopmentWauchope, Akelia; Abdelkader, Manar; Kapitonov, Vladimir; Miller, Stephen.asymmetric cell division
Transposon mining
215Analysis of two closely related Soybean mosaic virus (SMV) isolates, differing in their ability to overcome soybean Rsv4 resistance gene
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Plant-Pathogen InteractionsGagarinova, Alla; Wang, Aiming.Soybean mosaic virus
virus isolates
resistance gene
avirulence determinants
viral resistance-breaking determinants
phylogenetic analysis
recombination
infectious clone
312An Arabidopsis MLH1 mutant exhibits reproductive defects and reveals a dual role for this gene in mitotic recombination
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Mitosis/MeiosisDion, Eric; Li, Liangliang; Jean, Martine; Belzile, Francois.recombination
mitotic
homeology
2282An Arabidopsis mutant defective in pollen tube repulsion
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Cell-to-Cell and Long Distance SignalingJackson, Jamie; Palanivelu, Ravishankar.
2327An Arabidopsis MYB is required for the coordination of developmental events during trichome morphogenesis
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Mechanisms of Gene RegulationGilding, Edward; Marks, M. David.transcriptional regulation
gene regulation
cell growth regulation
MYB
trichome
290An Arabidopsis MYB Transcription Factor Confers Tolerance of Salinity and Other Abiotic Stresses
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SalinityPrice, Jillian; Farcasanu, Illeana; Jardine, Jim; Dominy, Peter.salinity
MYB
Abiotic
salt stress
Tolerance
transcription factor
2119Ancient DNA Analysis and Morphology of Grape Seeds from Antiquity and the Middle Ages Excavated in Hungary
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Genome EvolutionSzabó, Zoltan; Gyulai, Gabor; Kovacs, Laszlo G.; Toth, Zoltan; Lagler, Richard; Bittsánszky, Andras; Kocsis, Laszlo.Grape
Ancient DNA
Roman era
Middle Ages
Hungary
2504An Ethylene Receptor Interacting Protein is a Negative Regulator of Ethylene Responses
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Intracellular SignalingKendrick, Mandy; Shockey, Jason A; Ding, Wenming; Chang, Caren.ethylene signaling
CTR1
Ethylene receptors
132A New Insight Into the Tomato Chromoplast Proteome using DIGE
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Organelle BiologyPetrizzo, Rocco; Boronat, Alberto.tomato
DIGE
chromoplasts
2326A new system of soybean regeneration through somatic embryogenesis using immature embryonic tips
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Plant biotech & Risk AssessmentLoganathan, Murugan; Maruthasalam, Subbiyan; Yu, Chih-Wen; Hsu, Wen-Hwei; Lin, Chin-Ho.Immature embryonic tip
Somatic embryogenesis
Soybean
1879An inducible MnSOD localizes to the chloroplast and can replace FeSOD during iron-deficiency
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Oxidative StressAllen, Michael D.; Kropat, Janette; Page, M. Dudley; Long, Joanne C.; Merchant, Sabeeha S..oxidative stress
Chlamydomonas
iron-deficiency
1840An Introduction to Statistics Within a General Botany Course
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Education & OutreachHarley, S. M.; Wachocki, B. A..student data
general botany
Math Across the Curriculum
48An investigative laboratory for integrated plant and animal physiology at the sophomore-level at Willamette University
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Education & OutreachHawke, Scott; Stavrianeas, Stasinos; Tallman, Gary.integrated physiology
physiology education
introductory course
undergraduate
outreach
laboratory
course assessment
495A non-classical internal signal promotes the secretion of a thioredoxin h in plants
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Protein Targeting and Vesicular TraffickingJuárez-Díaz, Javier Andres; Guevara-García, Arturo; León-Mejía, Patricia; Vázquez-Santana, Sonia; Márquez-Guzmán, Judith; Cruz-García, Felipe.secretion
protein traffic
thioredoxin
NaTrxh
Nicotiana alata
281A Novel Defence Suppressor Protein Encoded by Cauliflower Mosaic Virus Inhibits SA-Dependent Defence Responses in Arabidopsis and Alters the Localization of NPR1
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Plant-Pathogen InteractionsLove, Andrew J; Geri, Chiara; Laird, Janet; Yun, Byung W; Loake, Gary; Sadanandom, Ari; Milner, Joel J.Pathogenicity factor
plant-virus interaction
Defence suppressor
810A novel factor MAIGO2 is essential for transport of seed storage proteins from the ER in Arabidopsis thaliana
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Membrane TransportLi, Lixin; Shimada, Tomoo; Takahashi, Hideyuki; Ueda, Haruko; Fukao, Yoichiro; Kondo, Maki; Mikio, Nishimura; Hara-Nishimura, Ikuko.vesicular-transport
1913A novel family of miniature inverted-repeat transposable elements is associated with genes in apple
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Evolution of Development and PhysiologyHan, Yuepeng; Korban, Schuyler.transposable elements
MITEs
Spring elements
247A novel nuclear protein interacts with the symbiotic DMI3 CCaMK of Medicago truncatula
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Plant-Symbiont InteractionsYeun, Li Huey; Messinese, Elsa; Mun, Jeong-Hwan; Jayaraman, Dhileepkumar; Lougnon, Geraldine; Rouge, Pierre; Barre, Annick; Bono, Jean-Jacques; Cook, Douglas R.; Ane, Jean-Michel.Symbiosis
Legume nodulation
Medicago truncatula
2677A novel pathway links chloroplast function and adaxial-abaxial leaf polarity in Arabidopsis
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Growth and Vegetative DevelopmentVvedenskaya, Irina; Kerstetter, Randall A..leaf polarity
chloroplast development
FLAVODENTATA
535A novel plant-specific splicing factor regulates Flowering in Arabidopsis
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Reproductive DevelopmentAli, Gul; Palusa, Saiprasad; Golovkin, Maxim; Prasad, Jayendra; Manley, James; Reddy, Anireddy S. N..splicing factor
flowering
pre-mRNA splicing
serine/arginine-rich proteins
alternative splicing
Arabidopsis
103A novel protein prenyltransferase α-subunit-like gene (PPAL) is required for seedling development and fertility in Arabidopsis thaliana
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Protein Modification and TurnoverZeng, Qin; Wang, Xuejun; Mucha, Andrew; Sutton, Safira; Running, Mark.protein prenyltransferase
protein prenylation
seed germination
2663A novel strategy for expressing di- and tri-cistronic constructs in transgenic plants
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Emerging TechnologiesMaiti, Indu; Pattanaik, Sitakanta; Bhattacharyya, Somnath; Das, Narayan; Raha, Sumita.transgene expression
PClSV
splicing
p7R
tricistronic
229A Novel Strategy to Dissect the Role of Hormones in the Regulation of Cell Separation in Arabidopsis thaliana
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Hormone BiologyBasu, Manojit; Gonzalez-Carranza, Zinnia; Azam-Ali, sayed; Roberts, Jeremy.IAA
Abscission
Polygalacturonase
AXR3-1
WUE
1304A novel targeting motif identified in a sugarcane vacuolar processing enzyme directs green fluorescent proteins into the lytic vacuole
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Protein Targeting and Vesicular TraffickingJackson, Mark; Rae, Anne; Casu, Rosanne; Grof, Chris; Bonnett, Graham; Maclean, Don.GFP
vacuole
Saccharum
sugarcane
legumain
subcellular targeting
biofactory
1578A novel WRKY-factor is involved in induction of PR-1a gene expression by tobacco mosaic virus infection
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Mechanisms of Gene Regulationvan Verk, M.C.; Maltese, F.; Neeleman, L.; Pappaioannou, D.; Bol, J.F.; Linthorst, H.J.M..transcription factor
WRKY
gene expression
tobacco
defence- and repair-related proteins
1151Anti-sensing acyclic polyol (mannitol) biosynthesis in celery decreases salt tolerance
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SalinityLoescher, Wayne; Sabbatini, Paolo; Song, Guo-Qing; Sink, Ken; Flore, James.salinity
mannitol
Photosynthesis
transgenic
antisense
2231Antifungal activity of oregano (Origanum vulgare ) oil against human pathogenic fungi
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Secondary MetabolismAdams, Amber; Israr, Mohd; Clauson, Mark; Sahi, Shivendra.Pathogenic fungi
Fungal metabolites
Antifungal agents
Plant secondary metabolism
2719Antifungal activity of ureases from Glycine max and Canavalia ensiformis seeds and a recombinant Helicobacter pylori urease
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Plant-Pathogen InteractionsBecker-Ritt, Arlete B; Martinelli, Anne H S; Mitidieri, Sydnei; Feder, Vanessa; Wassermann, German E; Pasquali, Giancarlo; Carlini, Celia R.urease
antifungal activity
defense mechanism
847Antisense inhibition of the plastidial glucose-6-phosphate/phosphate translocator in Vicia seeds shifts cellular differentiation and promotes protein storage
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Seed BiologyNguyen, Ha; Rollet, H; Häusler, R.E; Rutten, T; Göbel, C; Feussner, I; Radchuk, R; Tewes, A.; Claus, B; Klukas, C; Linemann, U; Weber, H; Wobus, U; Borisjuk, L.function of GPT1 in seed development
205An unusual glutaredoxin from the arsenic hyperaccumulator fern Pteris vittata L. regulates intracellular arsenite.
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Heavy Metals and PhytoremediationSundaram, Sabarinath; Rathinasabapathi, Bala; Ma, Lena; Rosen, Barry.Arsenic phytoremediation
Glutaredoxin
brake fern
oxidative stress
aquaglyceroporin
2666An X-ray crystal structure of a plant plasma membrane H+-ATPase
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Membrane TransportPedersen, Bjørn P.; Nissen, Poul; Buch-Pedersen, Morten J.; Palmgren, Michael G..Proton pump
plasma membrane
P-type ATPase
Crystal structure
H+-ATPase
1919A Physcomitrella patens mutant defective in cytokinin-mediated vegetative development
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Growth and Vegetative DevelopmentDietrich, Margaret; Swinehart, Ilea.Physcomitrella patens
Cytokinin
insertional mutagenesis
plant growth and development
Signal transduction
353Apoplastic solute accumulation accounts for turgor loss and fruit softening in grape (Vitis vinifera L.) berries
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Water RelationsWada, Hiroshi; Matthews, M.A.; Shackel, Ken.Fruit ripening
Fruit development
Matric potential
501A possible gene involved in starch metabolism
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Integrative Plant PhysiologyPeng, Jianling; Nikolau, Basil J; Wurtele, Eve.starch
co-expression
bioinformatics
1704Apparent sensitivity of nitrate reductase phosphorylation to oxidative signals
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Oxidative StressJain, Vanita; Qiu, Quan-Sheng; Oh, Man-Ho; Huber, Steven.methionine sulfoxide
nitrate reductase
CDPK
14-3-3 protein
methionine sulfoxide reductase
phosphorylation motif
538Application of anatomically resolved metabolomics to elucidate function of gene involved in Arabidopsis thaliana pollen exine assembly.
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Reproductive DevelopmentUrbanczyk-Wochniak, Ewa; Huhman, David V.; Lei, Zhentian; Dobritsa, Anna; Swanson, Robert; Edlund, Anna F.; Preuss, Daphne; Sumner, Lloyd W..pollen grains
metabolomic profiling
exine biosynthesis
chalcone synthases
1114Application of Designed Zinc-Finger Protein Technology in Plants
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Emerging TechnologiesArnold, Nicole; Bauer, Teresa; Collingwood, Trevor; DeKelver, Russell; Doyon, Yannick; Gao, Zhifang; McCaskill, Dave; Miller, Jeffrey; Mitchell, Jon; Moehle, Erica; Rebar, Ed; Rock, Jeremy; Rowland, Lynn; Shukla, Vipula; Simpson, Matt; Skokut, Michiyo; Urnov, Fyodor; Worden, Sarah; Yau, Kerrm; Zhang, Lei.Zinc finger nuclease
Targeted integration
homologous recombination
maize
163Application of Functional Genomics Approach to Analyze Pierce’s Disease in Grapes
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Plant-Pathogen InteractionsVasanthaiah, Hemanth KN; Katam, Ramesh; Basha, Sheikh M.Vitis
Grape
Genes
Differential expression
Diseases
328Applied water deficits accelerate ripening and induce changes in gene expression regulating flavonoid biosynthesis in grapevine
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Environmental PhysiologyCastellarin, S.D.; Gambetta, G.A.; Matthews, M.A..Water stress
anthocyanin
flavonol
107A Predicted Interactome for Arabidopsis thalianatext
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Modeling and Computational BiologyGeisler-Lee, Jane; OToole, Nicholas; Ammar, Ron; Provart, Nicholas; Millar, A. Harvey; Geisler, Matt.Arabidopsis thaliana
protein-protein interaction
interactome
bioinformatics
2685A protein complex stabilizes petD mRNA in Chloroplast
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Organelle BiologyMurakami, Shinya; Stern, David.Chloroplast gene expression
mRNA stability
873A proteomic study of Arabidopsis cleavage and polyadenylation specificity factor
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Mechanisms of Gene Regulationzhao, hongwei; Li, Quinn.RNA processing
polyadenylation
tandem affinity purification
mass spectrometry
cleavage and polyadenylation specificity factor
376A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis
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Reproductive DevelopmentWu, Yajun; Cai, Xiaoning; Ballif, Jenny; Endo, Saori; Davis, Elizabeth; Liang, Mingxiang; Chen, Dong; DeWald, Daryll; Kreps, Joel; Zhu, Tong; Harper, Jeffery.flower timing
CCAAT-binding transcription factor
Arabidopsis
1842A putative Golgin in Arabidopsis vacuolar trafficking
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Protein Targeting and Vesicular TraffickingKim, Sang-Jin; Bassham, Diane.trafficking
golgin
2239APX1 Expression Patterns in Soybeans Grown Under Elevated Ozone and CO2 Conditions
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Global ChangeLema, Alice-Patience Valentino; Ewy, Robert G..APX1
climate change
Soybeans
899
Canceled
Aquaporin gating in maize roots has large impacts on leaf growth and cell turgor
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Water RelationsEhlert, Christina; Tardieu, François; Simonneau, Thierry.water deficit
aquaporin gating
leaf growth
Turgor pressure
water potential
stomatal conductance
Water relations
1117Arabidopsis 14-3-3 (nu) is involved in defense against Pseudomonas syringae
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Plant-Pathogen InteractionsPeethambaran, Bela; Wang, Lin; Mitra, Raka; Botanga, Chris; Qi, Yiping; Glazebrook, Jane.Arabidopsis thaliana
14-3-3 protein
P. syringae
pathogen defense
324Arabidopsis Actin Depolymerizing Factor ADF9 Participates in Both Cytoplasmic and Nuclear Processes
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Cytoskeleton Structure and DynamicsBurgos-Rivera, Brunilis; Ruzicka, Daniel, R.; McKinney, Elizabeth, C.; Meagher, Richard, B..actin depolymerizing factor
early flowering
FLC
epigenetics
actin
424Arabidopsis APP1 is a rate limiting component of Auxin signalling required for activation of DR5-like Auxin response elements
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Integrative Plant PhysiologySrinivas, Makam; Li, Nanbing; Legas, Sheenalay; Sanjai, Deepti; Peer, Wendy; Murphy, Angus.auxin
AtAPP1
DR5-GUS
Signaling
AUX-IAA
494Arabidopsis Calcium Sensors Regulate Transition to Flowering and Nitric Oxide Accumulation
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Environmental PhysiologyTsai, Yu-Chang; Delk, Nikki; Chowdhury, Naweed; Braam, Janet.Calmodulin-like
nitric oxide
flowering
496Arabidopsis HAP2 (GCS1) is sperm-specific, required for pollen tube guidance, and essential for fertilization
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Reproductive DevelopmentFrank, Aubrey, C; von Besser, Kiera; Wong, Julian, L; Chaibang, Adisorn; Heyward, Keith; Preuss, Daphne; Johnson, Mark A.pollen tube guidance
double fertilization
membrane fusion
sperm
1621Arabidopsis Inositol Polyphosphate 6-/3-Kinase Gene (AtIpk2ß) Enhances Salt Resistance via Ionic and ABA Pathways
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SalinityChen, Zhen; Li, Yan; Xia, Huijun.AtIpk2ß
salt
Ion
ABA
Arabidopsis
390Arabidopsis KNOX-BELL proteins regulate flower specification in Arabidopsis
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Reproductive DevelopmentKanrar, Siddhartha; Becerra, Benjamin; Smith, Harley.KNOX-BELL
floral induction
floral specification
933Arabidopsis light-independent protochlorophyllide oxidoreductase A (PORA) restores bulk chlorophyll synthesis to a porB porC double mutant
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PhotomorphogenesisPaddock, Troy; Armstrong, Greg.POR
greening
Chloroplast
etioplast
1958Arabidopsis locus Resurrection (rst) Controls Susceptibility to Powdery Mildew
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Plant-Pathogen InteractionsMang, Hyung Gon; Qamar, Synan Abu; Laluk, Kristin; Park, Hyeong Cheol; Mengiste, Tesfaye; Jenks, Matthew A.; Hasegawa, Paul M.; Bressan, Ray A..rst
Erysiphe cichoracearum
salicylic acid
powdery mildew
397Arabidopsis Receptor for Activated C Kinase 1 (RACK1) scaffold proteins regulate diverse environmental stress signaling pathways
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Environmental PhysiologyUllah, Hemayet; Uvetta, Dozier; McLauchlin, April; Kundu, Nabanita; Fennel, Herman.Drought
oxidative stress
Photosynthesis
protein-protein interaction
RACK1
split-ubiquitin
955Arabidopsis Ser/Thr protein phosphatase 2A dephosphorylates PHOTOTROPIN 2 (PHOT2)
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TropismsTseng, Tong-Seung; Briggs, Winslow R..phototropin
PP2A
dephosphorylation
rcn1
2498Arabidopsis stromal Hsp70s are essential for plant development and important for seed thermotolerance
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Organelle BiologySu, Pai-Hsiang; Li, Hsou-min.Hsp70
protein import
Thermotolerance
2664Arabidopsis SUMO-E3 ligase, AtSIZ1 modulates FLD activity through SUMO modification
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Reproductive DevelopmentJin, Jing Bo; Jin, Yin Hua; Lee, Jiyoung; Miura, Kenji; Yoo, Chan Yul; Kim, Woe-Yeon; Hyun, Youbong; Somers, David. E; Lee, Ilha; Yun, Dae-Jin; Bressan, Ray A.; Hasegawa, Paul M..SIZ1
FLD
flowering
chromatin modification
SUMO
Arabidopsis
2588Arabidopsis thaliana 3-ketoacyl-ACP synthase2 (AtKAS2) gene is required for embryogenesis
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Reproductive DevelopmentHakozaki, Hirokazu; Park, Jong-In; Endo, Makoto; Takada, Yoshinobu; Kazama, Tomohiko; Takeda, Yoshimitsu; Suzuki, Go; Kawagishi-Kobayashi, Makiko; Watanabe, Masao.Arabidopsis thaliana
embryogenesis
3-ketoacyl-ACP synthase
2128Arabidopsis thaliana mutants with altered root system plasticity during mild osmotic stress
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Growth and Vegetative DevelopmentIngram, Paul; Malamy, Jocelyn.root development
Water stress
301Arabidopsis thaliana SQUALENE EPOXIDASE 1 is essential for root and seed development
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Secondary MetabolismRasbery, Jeanne; Shan, Hui; Thompson, Mary Kay; Matsuda, Seiichi P.T.; Bartel, Bonnie.terpene
triterpenoid
squalene epoxidase
905Arabidopsis TWISTED DWARF1 (TWD1) as a model system for “functional phylogeny” studies
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Growth and Vegetative DevelopmentHolladay, Steven; Hohenstatt, Mareike; Torres, Mirayda; Kolukisaoglu, Uener; Wanke, Dierk; Lafos, Marcel; Schulz, Burkhard.Twisted Dwarf
Plant Immunophilins
auxin
2676Arabidopsis type-B response regulators in cytokinin signaling
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Hormone BiologySawyer, Rebecca; Mason, Michael; Mathews, Dennis; Palmer, Christine; Argyros, D. Aaron; Rashotte, Aaron; Kieber, Joseph; Schaller, G. Eric.Cytokinin
two-component
Transcription
response regulator
1241Arabidospsis mutants with determinate primary root and alterations in root architecture
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Growth and Vegetative DevelopmentDubrovsky, Joseph; Hernández-Barrera, Alejandra; Lira-Ruan, Verónica; Shishkova, Svetlana; Soukup, Aleš; Reyes-Hernández, B. Jazmin; Dong, Gaofeng.meristem maintenance
lateral root
root architecture
determinate root growth
533Are caspases and ethylene involved in PCD-remodeling of lace place leaves?
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Growth and Vegetative DevelopmentGunawardena, Arunika N.; Voicu, Laura; Dengler, Nancy G..land plant
Programmed Cell Death
Perforations
2671A redox-active FKBP-type immunophilin functions in accumulation of the photosystem II supercomplex in Arabidopsis thaliana
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Photosynthesis(Light)Lima, Amparo; Lima, Santiago; Wong, Joshua, H.; Phillips, Robert, S; Buchanan, Bob, B; Luan, Sheng.chloroplast thylakoid lumen
protein folding
photosystem II
477A regulatory role of histidine in Arabidopsis metabolism and growth revealed by the low oil 1 mutant that corresponds to ATP-Phosphoribosyl Transferase 1, a key enzyme of histidine biosynthesis
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MetabolismShui, Wang; Guirong, Zhang; Wang, Hongyun; Ulanov, Alexander; Lozovaya, Vera; Lin, Yun.histidine
amino acid
primary metabolism
phytohormone
Lipids
1279A relationship between structural features and lily pollen tube adhesion activity of SCA (Stigma/style Cysteine-rich Adhesin) isoforms
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Reproductive DevelopmentChae, Keun; Zhang, Kangling; Zhang, Li; Morikis, Dimitrios; Kim, Suntae; Mollet, Jean-Claude; Lord, Elizabeth.pollen tube adhesion
SCA (Stigma/style Cysteine-rich Adhesin)
367Are pollen tube guidance signals species specific?
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Reproductive DevelopmentChaibang, Adisorn; Johnson, Mark A.interspecific cross
interspecific barrier
pollen tube guidance
pollen tube reception
207A role for fatty acid metabolism in regulating lateral root development in response to environmental conditions
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LipidsMacGregor, Dana; Deak, Karen; Brannon, Paul; Jung, Jee; Malamy, Jocelyn.fatty acids
Water stress
root development
lateral root
382A role for peroxins in peroxisome associated protein degradation
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Organelle BiologyMonroe-Augustus, Melanie; Lingard, Matthew J.; Bartel, Bonnie.peroxisomal matrix protein import
peroxisomal matrix protein degradation
2036A Screen for ABA-insensitive Mutants in Medicago truncatula
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Growth and Vegetative DevelopmentBurkart, Graham; Harris, Jeanne M..Abscisic Acid
Medicago truncatula
lateral root
2294A simple and rapid technique for stoichiometric detection of protein phosphorylation
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Intracellular SignalingAnderson, Jeffrey C.; Peck, Scott C..Phosphorylation
protein post-translational modification
kinase
2008A Simplified Method for the Measurement of Proline in Stressed Tissues
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Environmental PhysiologyPatitucci, Teresa; Feirer, Russ.drought stress
proline
Ceratopteris richardii
Fern
Arabidopsis thaliana
381A sorbitol dehydrogenase deficiency reduces kernel size in maize
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Seed Biologyde Sousa, S.M.; Hunter, C.T.III; Ankumah, N.; Avigne, W.T.; Koch, K.E..maize
sorbitol
kernel
phenotype
SDH
46Assembly of plant multiple gene expression cassettes using zinc finger nucleases
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Emerging TechnologiesTovkach, Andriy; Zeevi, Vardit; Tzfira, Tzvi.zinc finger nucleases
binary plasmids
multiple transgene
445Assessment of Genetic Diversity of Red Oak Species using DNA marker profiling
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Evolution of Development and PhysiologyWilliams, Ashantye S; Soliman, Khairy; Michler, Charles H; Aldrich, Preston; Kantety, Ramesh.
241A strong Arabidopsis guard cell promoter
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Environmental PhysiologyYang, Yingzhen; Costa, Alex; Schroeder, Julian.guard cell
promoter
calcium imaging
1577A Strong Constitutive Gene Expression System Derived from ibAGP1 Promoter and Its Transit Peptide
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Plant biotech & Risk AssessmentKwak, Man Sup; Shin, Jeong Sheop; Paek, Kyung-Hee; Bae, Jung Myung.promoter
transit peptide
transgenesis
2106A Study of Interactions Between Pseudomonas syringae, Effectors, and Lettuce
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Plant-Pathogen InteractionsYurko, Nathan; Teitzel, Gail M.; Crk, Tanja; Wroblewski, Tadeusz; Michelmore, Richard; Greenberg, Jean T..Pseudomonas
effector
lettuce
virulence
1819Asymmetric cell division in maize stomata
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Cytoskeleton Structure and DynamicsHumphries, John A; Cartwright, Heather N; Smith, Laurie G.stomata
maize
asymmetric cell division
551AtCel4 is an Endo β-1,4 glucanase with Roles in Secondary Cell Wall and Flower Development
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Cell Wallsdel Campillo, Elena; Korth, Jen; Asif, Mehar; Cole, Stephanie; Adgobe, Fadeke.cell wall
plant growth and development
endo beta 1,4 glucanases
133AtCSLD2 is another cellulose synthase-like gene important for root hair development in Arabidopsis
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Cell WallsYoo, Cheol Min; Blancaflor, Elison B.Cellulose
root development
cellulose synthase like gene
848A Tobacco Pistil-Specific Lysine-Rich Protein Controls Stigma Size And Inhibits Style Elongation
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Reproductive DevelopmentDePaoli, Henrique C.; Brito, Michael S.; Quiapim, Andrea C.; Rodrigues, Ricardo A.O.; Dornelas, Marcelo C.; Teixeira, Simone P.; Goldman, Gustavo H.; Goldman, Maria-Helena S..pistil-specific gene
style elongation
lysine-rich protein
stigma size
1210A tomato zinc finger protein associate with environmental stresses and affect the developmental stage in Arabidopsis
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Oxidative StressLee, Jent-turn; Chan, Ming-Tsair.abiotic stress
1153A Transcriptional Repression Motif in the MADS-factor AGL15 is Involved in Recruitment of Histone Deactylase Complex Components
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Mechanisms of Gene RegulationHill, Kristine; Wang, Huai; Perry, Sharyn E.transcriptional repression
2099Attenuated Stomatal Response to ABA under Supraoptimal CO2
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Environmental PhysiologyLevine, Lanfang H.; Richards, Jeffrey; Wheeler, Raymond M..Elevated CO2
Abscisic Acid
stomatal conductance
Soybean
1743AtVps9a, the common activator for two distinct types of Rab5 GTPases, is essential for plant development
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Protein Targeting and Vesicular TraffickingGoh, Tatsuaki; Uchida, Wakana; Takeuchi, Masaki; Ito, Emi; Arakawa, Satoko; Sato, Ken; Ueda, Takashi; Nakano, Akihiko.Rab5
endocytosis
GEF
development
1711A two-plane response to temperature and photoperiod in Arabidopsis thaliana: the result of two different processes in the control of flowering time?
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Environmental PhysiologyVillegas, Daniel; Alcalde, Jose Antonio.Environment adaptability
Linear Photothermal Model
Flowering prediction
216ATXR5 and ATXR6 are replication-dependent chromatin modifiers affecting flowering time in Arabidopsis thaliana
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EpigeneticsJacob, Yannick; Michaels, Scott D..histone methylation
SET domain proteins
DNA replication
325Autophagy Protein 6 (ATG6) is required for post-microsporogenesis pollen development in Arabidopsis thaliana
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Reproductive DevelopmentHarrison-Lowe, Nicola; Olsen, Laura.autophagy
pollen
ATG6
41Auxin, actin, and growth of the Arabidopsis thaliana primary root
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Hormone BiologyRahman, Abidur; Bannigan, Alex; Sulaman, Waheeda; Pechter, Priit; Blancaflor, Elison; Baskin, Tobias.auxin
actin
2,4-D
cell division
PIN proteins
2573Auxin, KANADI1 and class III HD-ZIP transcription factors in vascular tissue differentiation
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Growth and Vegetative DevelopmentIlegems, Michael; Rusconi, Saul; Meylan-Bettex, Marlyse; Bowman, John; Stieger, Pia.auxin
classIII HD-ZIP
KANADI1
298Auxin effects on cell elongation and microtubule organization in Chara
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Hormone BiologyJin, Qiaojun; Hasenstein, Karl.Chara, IAA, NAA, TFIBA
1710Auxin regulates polar axuin transport by regulating the auxin efflux facilitator PINs localization and activity
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TropismsPan, Jianwei; Zhang, Kuihua; Li, Guangming; Chen, Rujin.PINs
polar auxin transport
2705Auxin Response Factor 9, a new player in gravity signal transduction?
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TropismsRoberts, Diana; Nadella, Vijayandand; Wyatt, Sarah.Auxin Response Factor
gravitropism
924Auxin Signaling F-Box 4 (AFB4) is essential for hypocotyl elongation in Arabidopsis
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Hormone BiologySantner, Aaron; Mooney, Sutton; Prigge, Michael; Estelle, Mark.auxin
F-box proteins
hypocotyl elongation
896Auxin status regulates the expression of the GA20ox1 gene in seedlings of Arabidopsis thaliana
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Hormone BiologyDesgagne-Penix, Isabel; Sponsel, Valerie.gibberellin
auxin
GA20ox
Auxin transport
DELLA
1486A Versatile Calmodulin is Temperature-dependent Sensor
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Environmental PhysiologyWu, Hui-Chen; Jinn, Tsung-Luo.Heat Shock
Calmodulin
Ca2+ Oscilllation
981BASIC PENTACYSTEINE Proteins, a Novel Family of Putative Transcription Factors in Arabidopsis thaliana
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Reproductive DevelopmentMonfared, Mona; Gasser, Charles.
1064Bax Inhibitor-1 Modulates Endoplasmic Reticulum Stress-mediated Programmed Cell Death in Arabidopsis
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Intracellular SignalingWatanabe, Naohide; Lam, Eric.BI-1
Programmed Cell Death
ER stress
abiotic stress
1845Behavior of Thlaspi caerulescens metallicolous and non-metallicolous growing in mine soils of the North West of Morocco: Effects of soil factors and Plant metal concentration
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Heavy Metals and PhytoremediationBerrah El Kheir, Safae; Bouabdli, Abdelhak; Saidi, Nadia; Berthomieu, Pierre.Phytoremediation
Thlaspi caerulescens
metallicolous
non-metallicolous
1996Beta amylase localization in bark tissues of alfalfa taproots
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Growth and Vegetative DevelopmentIhonor, Pamela; Gana, Joyce Ache.beta-amylase
defoliation
968
Canceled
Bio-safety evaluations on ipt(isopentenyl transferase gene) transgenic broccoli delaying in postharvest yellowing.
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Plant biotech & Risk AssessmentFang, Shih-Hua; Tsai, Shu-Chen; Chang, Yu-Ming; Chen, Long-Fang O..Transgenic broccoli
isopentenyltransferase
postharvest yellowing
GMO food safety
biosafety
234Biochemical Analysis of Plant FtsZ1 and FtsZ2
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Organelle BiologyOlson, Bradley; Osteryoung, Katherine.FtsZ
Chloroplast Division
Tubulin
195Biochemical and Functional Studies of S-RNase-Mediated Self-incompatibility in Petunia inflata
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Reproductive DevelopmentHua, Zhihua; Meng, Xiaoying; Kao, Teh-hui.self-incompatibility
protein-protein interaction
protein degradation
ubiquitination
SLF like gene
586Biochemical and immunohistochemical analysis of pectic polysaccharides in the cell walls of salt tolerant Arabidopsis suspension cultures
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Cell WallsQouta, Lolita; Abdel-Massih, Roula; Brett, Chris; Nimmo, Hugh; Baydoun, Elias.
1778Biochemical and Molecular Analysis of LePS2;1- a Phosphate Starvation Induced Protein Phosphatase Gene from Tomato
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Mechanisms of Gene RegulationBaldwin, James C.; Karthikeyan, Athikkattuvalasu S.; Cao, Aiqin; Raghothama, Kashchandra G.phosphate starvation
Protein phosphatase
LePS2
86Biochemical approaches for the identification of the functions of CoA ligases in Arabidopsis
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MetabolismChen, Hui; Kim, Hyun Uk; Shockey, Jay; Browse, John.CoA ligase
malonyl-CoA
malonic acid
536Biochemical Characterization of Putative Fucosyltransferases for Arabinogalactan-proteins
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Cell WallsWilliams, Matthew R.; Showalter, Allan M.; Faik, Ahmed.fucosyltransferase
glycosyltransferase
AGPs
arabinogalactan-proteins
HRGPs
hyperglycosylated hydoxyproline-rich glycoproteins
fucose
fucosylation
2464Biocontrol evaluation of Wheat Take-all Disease by Using Trichoderma Effective Isolates
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Plant-Pathogen InteractionsMehrabi Koushki, Mehdi; Zafari, Doustmorad; Rouhani, Hamid.Take-all, Trichoderma Isolates, Biocontrol, Metabolite and Mycoparasitism
767Biocontrol of Egyptian leaf worm using some fungal secondary products
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Plant-Pest InteractionsHaroun, Bakry; El-fekky, Fawzy; Ibrahim, Ahmed.Fungal metabolites
Egyptian cotton worm
biocontrol
2487Biocontrol of root pathogens and gene induction in seedlings of Capsicum annuum with native isolates of binucleate Rhizoctonia
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Plant-Pathogen InteractionsFraire-Velázquez, Saul; Pescador-Flores, Blanca; Rodríguez-Guerra, Raul; Rodríguez-Kessler, Margarita; Jiménez-Bremont, Francisco; Simpson-Williamson, June.binucleate Rhizoctonia
SAR induction
Capsicum annuum
plant defense
157Biogenesis of Protein Storage Vacuoles (PSVs) in Tobacco Developing Seeds
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Protein Targeting and Vesicular TraffickingTse, Yu Chung; Liu, Sin Ting; Jiang, Liwen.Protein storage vacuole
Prevacuolar compartments
1271Bioinformatic characterization of the plant “secretome”
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Protein Targeting and Vesicular TraffickingCarpita, Christopher S.; Lee, Sang-Jik; Mueller, Lukas; Rose, Jocelyn K.C.bioinformatics
secretion
secretome
1342Bioinformatics, cloning and expression of putative xyloglucan biosynthetic genes from wheat and rice.
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Cell WallsNadella, Ramya; Faik, Ahmed.xyloglucan
Xylosyltransferases
grasses
2209Biological Warfare in Invasive Plants
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Secondary MetabolismAbts, Anna J.; Lang, Kimberly A.; Vaughn, Steven F.; Morris, Sherri J.; McConnaughay, Kelly.alliaria petiolata
garlic mustard
Invasive Species
glucosinolate
secondary metabolism
2083Biomonitoring of Boron Micronutrient Stress in Arabidopsis thaliana and Pelargonium X Hortorum
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Mineral NutritionDeng, Ying; Yu, Futong; Mei, Chen; Frantz, Jonathan; Heckathorn, Scott A.; Gray, John.boron
nutrient deficiency
Pelargonium
biomarker
hidden hunger
808Biosynthesis of meta-tyrosine in fescue
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Secondary MetabolismRehak, Ludmila; Jander, Georg.allelopathy
fescue
meta-tyrosine
non-protein amino acids
bioherbicide
phenylalanine
288Biotic damage to leaves universally down-regulates the transcription of photosynthesis genes
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Plant-Pest InteractionsDeLucia, Evan; Bilgin, Damla; Zavala, Jorge; Zhu, Jin; Ort, Donald.herbivory
pathogen
Photosynthesis
gene expression
microarray
249Blue-light dependent stabilization of ZEITLUPE requires the LOV domain in Arabidopsis
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RhythmsFujiwara, Sumire; Kim, Woe-Yeon; Suh, Sung-Suk; Kim, Jeongsik; Kim, Yumi; Han, Linqu; David, Karine; Putterill, Joanna; Nam, Hong Gil; Somers, David E..circadian
ZEITLUPE
ZTL
blue light
clock
1981BOBBER1 is a heat shock protein that forms cytoplasmic aggregates in response to heat stress
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Temperature ResponsesPerez, Dahlia; Kaplinsky, Nick.heat shock protein
heat stress granule
1973Boron Stress and Boron Tissue Distribution in Arabidopsis thaliana and Pelargonium X Hortorum
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Mineral NutritionYu, Futong; Pitchay, Dharmalingam; Frantz, Jonathan; Heckathorn, Scott A.; Gray, John.boron
micronutrient
Mineral nutrition
nutrient deficiency
Pelargonium
287Branched-Chain Amino Acids Are Required for All Stages of Plant Development Including Gametophytes Function
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MetabolismManabe, Yuzuki; Miki, Brian.Branched-chain amino acid biosynthesis
Arabidopsis thaliana
CSR1
Acetohydroxyacid synthase (AHAS)
Imidazolinone
488Brassinosteroid, abscisic acid and calcium: determining the connection
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Hormone BiologyRahman, Tawhidur.brassinosteroid
Abscisic Acid
Calcium
abiotic stress
24-epibrassinolide, EBR
259Breeding and selection of new, high-yielding varieties of shrub willow (Salix spp.) for bioenergy, biofuels, and bioproducts
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Bio-Energy CropsSmart, Lawrence B.; Cameron, Kimberly D.; Serapiglia, Michelle J.; Volk, Timothy A.; Abrahamson, Lawrence P..ethanol
biorefinery
energy crop
biomass/energy
genetics
187Ca2+/CaM signaling through AtGTL1 mediates drought stress adaptation
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Water RelationsYoo, Chan Yul; Jin, Jing Bo; Miura, Kenji; Jin, Yin Hua; Gosney, Michael; Mickelbart, Michael V.; Bressan, Ray A.; Hasegawa, Paul M..Drought
Ca2+
Calmodulin
747Cadmium-induced ammonium ion accumulation of rice seedlings at high temperature is mediated through abscisic acid
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Heavy Metals and PhytoremediationHsu, Yi Ting; Kuo, Mei Chun; Kao, Ching-Huei.Abscisic Acid
ammonium ion
Cadmium
Oryza sativa
temperature
503Calcium Biominerals in Trichomes of the Brassicaceae
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Mineral NutritionWebb, Mary Alice.biomineral
trichome
Brassicaceae
Arabidopsis
456Calcium Dependent Protein Kinases: A Critical Role in Pollen Tube Growth
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Intracellular SignalingBarron, Yoshimi; Romanowsky, Shawn; Myers, Candace; Harper, Jeffrey.kinase
kinase signaling
pollen tube
reproductive development
calcium dependent protein kinase
genetics
protein-protein interaction
pollen
male defect
plasma membrane
Arabidopsis
calcium signaling
protein kinase signaling
intracellular signaling
Signaling
acylation
isoform specificity
327cAMP acts as an early signal upstream from Ca2+ in plant pathogen perception signaling cascades
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Plant-Pathogen InteractionsMa, Wei; Ali, Rashid; Lemtiri-Chlieh, Fouad; Smigel, Andries; Berkowitz, Gerald.hypersensitive response
Calcium
cAMP
ion channel
1502Can the three Arabidopsis thaliana isozymes of mitochondrial dihydrolipoylacetyltransferase assemble into PDC hetero-cores?
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MetabolismTovar-Mendez, Alejandro; Broz, Amanda; Miernyk, Jan A; Randall, Douglas D.Arabidopsis
bimolecular fluorescence complementation
enzymology
pyruvate dehydrogenase complex
1079Carpel development genes and dioecy in the cactus Opuntia stenopetala
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Reproductive DevelopmentVázquez-Santana, Sonia; Orozco-Arroyo, Gregorio; Flores-Renteria, Lluvia; Montero-Alfaro, Odeth; Alfaro-Pereira, Isabel; Márquez-Guzmán, Judith; Cruz-García, Felipe.O. stenopetala unisexuallity
male defect
Carpel development
Stylish
CRABS CLAW
Tousled
164Cauliflower Mosaic Virus Protein P6 is a Suppressor of RNA-Silencing
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Plant-Pathogen InteractionsLove, Andrew J; Laird, Janet; Schweiger, Pawel; Hamilton, Andrew J; Sadanandom, Ari; Milner, Joel J.Silencing Suppressor
Pathogenicity factor
291Cell-to-cell communication in pollen tube reception at the female gametophyte
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Reproductive DevelopmentKessler, Sharon; Escobar, Juan-Miguel; Grossniklaus, Ueli.pollination
receptor kinase
synergid
fertilization
FERONIA
pollen tube
2314Cellular Response to Oxidative Stress in Halotolerant Chlorophytic Algae
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Oxidative StressSherman, Timothy D; Major, Kelly; Henley, William.stress
algae
halophyte
Photosynthesis
temperature
salinity
proteomics
1065Cellulases for biomass conversion from transplastomic tobacco
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Bio-Energy CropsZiegelhoffer, Thomas; Raasch, John A; Austin-Phillips, Sandra.cellulase
biomass
plastid transformation
cellulosic ethanol
1920Cellulose Synthase (CesA) Genes in the Red Alga Porphyra yezoensis Ueda
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Cell WallsRoberts, Eric; Roberts, Alison.Cellulose
red alga
linear terminal complex
CesA
Porphyra
1771Cell wall mutations affect the structure of the endomembrane system
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Cell WallsLi, Xuemei; Wang, Lijuan; Peña, María; York, William; O'Neill, Malcolm; Link, Bruce; Reiter, Wolf-Dieter.xyloglucan
MUR3
galactosyltransferase
Endomembrane
1021Cell wall proteome in the maize primary root growth zone: region-specific responses to water deficit
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Cell WallsZhu, Jinming; Alvarez, Sophie; Marsh, Ellen; LeNoble, Mary; Chen, Sixue; Nguyen, Henry; Wu, Yajun; Schachtman, Daniel P.; Sharp, Robert.cell wall
maize
proteome
roots
water deficit
1298CFM3, a CRM domain protein related to the chloroplast splicing factor CRS1, functions dually in chloroplast group II intron splicing and mitochondrial gene expression
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Organelle BiologyAsakura, Yukari; Bayraktar, Omar; Watkins, Kenneth; Barkan, Alice.Chloroplast
intron splicing
group II intron
RNA-binding protein
mitochondria
422Changes in Branched Chain Amino Acid Composition in the Fruit of Acetohydroxy Acid Synthase Silenced Tomato Mutants
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Metabolic EngineeringCollins-Hed, Andrew; Campbell, Michael; Wang, Yi-Hong.Branched-chain amino acid biosynthesis
Acetohydroxyacid synthase (AHAS)
Acetolactate synthase
tomato
963Changes in GABA shunt metabolites in calmodulin mutants of Arabidopsis thaliana under abiotic stresses
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MetabolismAl-Quraan, Nisreen; Locy, Robert; Braam, Janet; Singh, Narendra.GABA
glutamate
alanine
Calmodulin
mutants
Arabidopsis
1667Changes in gene expression and physio-biochemical adjustaments caused by heat stress during tomato fruit setting
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Temperature ResponsesGiorno, Filomena; Massarelli, Immacolata; Nurcato, Roberta; Giovannoni, James J.; Monti, Luigi; Leone, Antonella; Grillo, Stefania.Tomato fruit-set
high temperature
2400Changes in macromolecule composition and the levels of metal ions in the early stages of salt stress in two cultivars of sweet potato under in vitro conditions
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SalinityGillespie, Kellen A; Richter, R.C; Potluri, Devi Prasad V..sweet potato
abiotic stress
Ionomics
proline
2549Changes in the endogenous cytokinin profile of LEACO10.821kb-ipt transgenic chrysanthemum lines correspond with variations in flowering and branching morphology
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Hormone BiologyKhodakovskaya, M.; Vankova, Radomira; Li, Aizhen; Malbeck, J.; Li, Yi.; McAvoy, Richard.Cytokinin
ipt gene
chrysanthemum
1468Changes in the Levels of Expression of a Cytoplasmic Aconitase/IRP1 Homologue in Gravistimulated Maize Pulvini
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TropismsDoore, Sarah; Clore, Amy M..cytoplasmic aconitase
maize
IRP1
real-time RT-PCR
gravitropism
pulvinus
317Changes in well-defined phases of bud dormancy may involve shifts in carbohydrate metabolism
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Growth and Vegetative DevelopmentChao, Wun; Anderson, James V.; Horvath, David.leafy spurge
underground adventitious bud
carbohydrate
dormancy
Real time PCR
beta-amylase
468Characterising the Functional Importance of Folate Polyglutamylation in Plants
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MetabolismMehrshahi, Payam; Tucker, Greg; Bennett, Malcolm J..tetrahydrofolate
polyglutamylation
folylpolyglutamate synthetase
folate
1120Characteristics of Polyphenol Oxidases from Red Clover (Trifolium pratense)
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Integrative Plant PhysiologySchmitz, George; Hatfield, Ronald; Sullivan, Michael L..polyphenol oxidase
red clover
alfalfa
latent activity
1569Characterization and Functional Analysis of NAC-like genes in regulating plant development in Arabidopsis thaliana
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Growth and Vegetative DevelopmentShih, Ching-Fang; Lin, Jian-Shin; Yang, Chang-Hsien.meristem
NAC
transcription factor
2355Characterization of 5'-3' Exoribonucleases in the green alga Chlamydomonas reinhardtii
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Mechanisms of Gene RegulationFischer, Michael J.; Upchurch, Kyle M.; Higgs, David C..Transcript stability
Organelle
RNA splicing
109Characterization of 6 different soybean promoters using GFP expression in transgenic soybean
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Growth and Vegetative DevelopmentFiner, John; Chiera, Joseph; Bouchard, Robert.Soybean
promoter
Glycine max
polyubiquitin
GFP
819Characterization of Acetyl-Glyceride Production in the Seeds of Euonymus alatus.
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LipidsDurrett, Timothy; Milcamps, Anne; Tumaney, Ajay; Ohlrogge, John; Pollard, Mike.Euonymus alatus
Acetylglycerides
Triacylglycerols
Biodiesel
2457Characterization of a chemical responsive element on promoter of rice class I small heat shock protein genes
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Temperature ResponsesYeh, Ching-Hui; Lin, Ya-Ping; Chen, Ming-Tse.azetidine
small heat shock proteins
cycloheximide
603Characterization of A Chloroplast Import Deficient Mutant cid4
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Protein Targeting and Vesicular TraffickingZhong, Rong; Thompson, Jennifer; Lamppa, Gayle.chloroplast protein transport
1907Characterization of a female gametophytic Arabidopsis mutant defective in pollen tube guidance
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Reproductive DevelopmentTsukamoto, Tatsuya; Drews, Gary; Palanivelu, Ravishankar.Arabidopsis
Female gametophytic mutant
fem137
pollen tube guidance
475Characterization of an ectopic cell separation mutant tfa1-2 "things fall apart"
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Cell WallsRao, Hongyu; Hirsch, Cory D; Kim, Joonyup; Carpita, Nicholas C; McCann, Maureen; Willats, William G T; Patterson, Sara E..cell separation
cell wall
1246Characterization of a Novel, Recessive Allele of CUL1 that Disrupts SCF Regulation at the C-terminus of CUL1
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Protein Modification and TurnoverGilkerson, Jonathan; Brown, Jessica; Callis, Judy.auxin
SCF
Aux/IAA
1661Characterization of Arabidopsis Chloroplast Movement Mutants
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TropismsWhippo, Craig W.; DeSloover, Daniel; Davis, Phillip A.; Hangarter, Roger.Chloroplast movement
pleiotropic mutant
Arabidopsis
1772Characterization Of Arabidopsis crp1 Gene in relation to Fungal Resistance
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Plant-Pathogen InteractionsPerricone, Adam; Goff, Kerry; Ramonell, Katrina.defense mechanisms
resistance genes
Arabidopsis
crp1
1724Characterization of Arabidopsis receptor kinases involved in fungal innate immunity
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Plant-Pathogen InteractionsYang, Xin; Stevenson, Lauren; Ramonell, Katrina.RLK
general elicitors
innate immunity
323Characterization of a rice spermidine transporter gene by heterologous expression in yeast mutants
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Membrane TransportGopala, Mulangi, RV; Phuntumart, Vipaporn; Morris, Paul F.polyamine
transporters
rice
spermidine
phloem loading
Stress response
1082Characterization of defense-related gene expression levels in chinch bug (Blissus occiduus) infested buffalograss (Buchloe dactyloides) varieties using qRT-PCR
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Plant-Pest InteractionsDixon, Bryna; Toda, Luciana; Donze, Teresa; Heng-Moss, Tiffany; Twigg, Paul.plant-insect interaction
defense
molecular marker
2374Characterization of floral transition in lisianthus (Eustoma grandiflorum)
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Growth and Vegetative DevelopmentLugassim-Ben Hamo, Maya; Zaccai, Michele.
2112Characterization of fruit organ number and patterning in Arabidopsis
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Cell-to-Cell and Long Distance SignalingDurbak, Amanda; Hsiao, Erica; Tax, Frans.carpel
Fruit development
CLAVATA
135Characterization of guar, Cyamopsis tetragonoloba (L. Taub.) genetic resources for flavonoid traits
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Secondary MetabolismMorris, J.B.; Wang, Ming Li.flavonoid
guar
Genetic diversity
genetic resources
160Characterization of Metabolites, Proteins and Transcripts in Arabidopsis thaliana Phloem Exudate Reveals the Presence of Lipids and Novel Metabolic Pathways
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Cell-to-Cell and Long Distance SignalingHunzicker, Gretel M; Guelette, Brandon S; Chamberlin, Beverly; Benning, Urs F; Hoffmann-Benning, Susanne.phloem
phloem transport
Arabidopsis
proteins
Lipids
metabolites
mRNA
1876Characterization of PiSCP1, a novel substrate of a CDPK that regulates pollen tube growth polarity
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Reproductive DevelopmentYoon, Gyeong Mee; Guo, Feng; McCubbin, Andrew G.pollen tube growth
calcium signaling
CDPK
1646Characterization of Proanthocyanidin Biosynthesis in Engineered Plants
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Secondary MetabolismXie, DeYu; Zachary, Christopher; zhou, lili.Proanthocyanidins
Condensed tannins
Flavan-3-ols
Anthocyanidin reductase
PAP1
2032Characterization of promoter regions of six cellulose synthase genes in Eucalyptus grandis
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Mechanisms of Gene RegulationCreux, N. M.; Ranik, M.; Berger, D. K.; Myburg, A. A..promoter
cellulose synthase
cis-element
heterologous gene expression
promotor evolution
98Characterization of proteins from corn coleoptile epidermis that are involved in auxin-induced growth
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Growth and Vegetative DevelopmentDickerson, Tiffany J; Hoffmann-Benning, Susanne.growth
cell wall
cuticle
proteomics
1303Characterization of recombinant plastidial serine hydroxymethyltransferase from Arabidopsis
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MetabolismZhang, Yi; Santiago, Katherine; Cross, Joanna; Sandoval, Francisco J.; Roje, Sanja.Arabidopsis
Serine Hydroxymethyltransferase
Kinetic
GFP
Subcellular localization
protoplasts
1568Characterization of salt-induced genes mcCPN and mcSNF in halophyte Mesembryanthemum crystallinum L.
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SalinityChen, Yu-Chan; Yang, Fang-Yu; Wang, Yung-Chung; Yen, Hungchen Emilie.
ice plant
2542Characterization of sphingoid base-1-phosphate lyase in Arabidopsis thaliana
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LipidsIshiguro, Mai; Kenta, Hosokawa; Masahiro, Nishikawa; Imai, Hiroyuki.sphingolipid
sphingosine-1-phosphate
ABA
drought stress
2458Characterization of subcellular localization and functions of AtMIN7 in Arabidopsis thaliana
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Protein Targeting and Vesicular TraffickingLee, Young Nam; Nomura, Kinya; He, Sheng-Yang.AtMIN7
confocal microscopy
2047Characterization of the Brassinosteroid-Specific Regulatory Factor BZR1 in Cotton Fiber Development
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Hormone Biologyabdelmageed, haggag; Attaya, Hosam; Fokar, Mohamed; Allen, Randy D..Brassinosteroids
Cotton fiber
transcription factors
1900Characterization of the det30/her1 constitutive-photomorphogenic mutant of Ceratopteris richardii reveals a cryptochrome-dependent, antheridiogen-independent mechanism that promotes male sexual determination.
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PhotomorphogenesisSpiro, Mark; Barnett, Judith; Fries, Carol; Mauskapf, Adam.Ceratopteris richardii
Fern
photomorphogenesis
cryptochrome
387Characterization of the peptide deformylases in rice
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Growth and Vegetative DevelopmentSunok, Moon; Suyoung, An; Lee, Dong-Yeon; An, Gynheung.peptide deformylase
Chloroplast
mitochondria
chlorina
growth retardation
1028Characterization of the role of STP1 in seed germination and root growth in Arabidopsis thaliana.
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Integrative Plant PhysiologyDaniel, Janet; Hupalo, Daniel; Ruck, Kate; McAdams, Julia; Souther, Stephanie.sugar transport
osmotic
Arabidopsis thaliana
seedling growth and development
549Characterization of the Structure and Function of Arabidopsis thaliana Cell Wall Linker Protein (CWLP)
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Cytoskeleton Structure and DynamicsHonig, Arik; Miller, Gad; Abu Abied, Muhamad; Sadot, Einat; Zilberstein, Aviah.PRP
drought tolerance
Plasmolysis
cytoskeleton
1588Characterization of three ERF transcription factors from Bupleurum kaoi
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Hormone BiologyLiu, Wen-Yu; Ho, Feng-Ju; Lin, Tsai-Yun.Bupleurum kaoi
ERFs
methyl jasmonate
222Characterization of two brassinosteroid-regulating cytochrome P450 enzymes from rice, CYP734A2 and CYP734A5
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Hormone BiologyThornton, Leeann E.; Neff, Michael M..Arabidopsis
rice
brassinosteroid
cytochrome P450
2228Characterization of Ubiquitin Fusion Degradation Protein (Ufd1) Accumulation in Maize and Arabidopsis
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Protein Modification and TurnoverLopez, Harry; Gillikin, Jeff; Boston, Rebecca.Endoplasmic reticulum
protein degradation
Ubiquitin Fusion Degradation (Ufd1) protein
427Characterization of ZIP1’s role in zinc homeostasis in the Model Legume Medicago truncatula
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Mineral NutritionStephens, Brian W; Cook, Douglas R.; Grusak, Michael A..zinc transport
ZIP transporters
167Chemical Communications: Deciphering the chemical language of C. elegans
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Plant-Pest InteractionsKaplan, F; Ajredini, R; Stadler, M; Zachariah, C; Alborn, H; Zhang, F; Bruschweiler, R; Srinivasan, J; Dossey, A; Rocca, J R; Sternberg, P; Teal, P; Edison, A S.elegans
2266Chino del Tomate Replication
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Plant-Pathogen InteractionsThomas, John; Zack, Colette; Stiney, Amanda; Liwienski, Amy; Elwahed, Abd.Geminivirus
tomato
330Chromatin Proteomics of Rice (Oryza sativa) Suspension Cell
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ChromatinTan, Feng; Peng, Zhaohua.chromatin
proteomics
314Chromatin remodeling regulates transcriptional repressors of phosphate starvation responses in Arabidopsis
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Mineral NutritionSmith, Aaron P.; Deal, Roger B.; Meagher, Richard, B..Phosphate
Actin-related protein
transcriptional repression
BTB/POZ
histone variant
Arabidopsis
989Cinnamoyl CoA reductase down-regulation and its impact on forage quality in alfalfa (Medicago sativa)
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Secondary MetabolismJackson, Lisa A.; Chen, Fang; Nakashima, Jin; Shadle, Gail L.; Dixon, Richard.lignin
digestibility
alfalfa
CCR
200Circadian Timing Inheresnt in the Structure of Water
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RhythmsMorre, D. James; Morre, Dorothy M.; Jiang, Ziying; Hignite, Heather.biological clock
354Citrus Low Temperature Responsive Gene (Clt): Genome Organization and Expression Analysis
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Temperature ResponsesBennett, Cassandra; Pacheco, Arlene; del Rio, Sonia; Ortiz, Carlos; Louzada, Eliezer.acclimation
Citrus
cold-signaling
freezing tolerance
1369Class-specific interaction of profilin and ADF isovariants with actin in the regulation of plant development
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Cytoskeleton Structure and DynamicsKandasamy, Muthugapatti K.; Burgos-Rivera, Brunilis; McKinney, Elizabeth, C.; Ruzicka, Daniel, R.; Meagher, Richard, B..actin depolymerizing factor
Actin dynamics
Ectopic expression
Actin-binding proteins
Isovariant specificity
2717Cloning and Characterization of an Anther Specific Promoter from Arabidopsis thaliana
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Reproductive DevelopmentThakare, Dhiraj R; Vajinder, Kumar; Jain, Pradeep K; Chikhale, Nandkishor J; Bhat, S. R.; Srinivasan, R.PER18
anth85
anther specific promoter
1556Cloning and Characterization of D-Arabinose 5-Phosphate Isomerase in Arabidopsis
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Cell WallsWang, Lijuan; Reiter, Wolf-Dieter.KDO
arabinose 5-phosphate isomerase
845Cloning and characterization of glycine-rich RNA binding protein gene from Nicotiana tabacum
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Water RelationsLee, Mi Ok; Hong, Choo Bong.RNA-binding protein
glycien rich
1926Cloning and expression patterns of Alliaria petiolata class III peroxidases
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Cell WallsSchultz, Katelyn; Kleinschmidt, Ann.peroxidase
alliaria petiolata
expression patterns
1258CNGC-mediated Ca conductance, cytosolic Ca/CaM rise and resulting activation of nitric oxide generation are critical steps in plant innate immunity
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Plant-Pathogen InteractionsMa, Wei; Smigel, Andries; Tsai, Yu-Chang; Braam, Janet; Berkowitz, Gerald.Calcium, CAM, ion channel
nitric oxide
hypersensitive response
1397Colocalization of GPS2 and PIN proteins to demonstrate their role in the signal transduction in gravitropism
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TropismsMcKenzie, Jonathan; Luesse, Darron; Wyatt, Sarah.Signal transduction
Auxin transport
gravitropism
gps2
PIN proteins
Gravity
1393Colocalization of intracellular filaments with the vacuoles in carpocallus cells
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Cytoskeleton Structure and DynamicsMaximova, Eugenia.carpocallus
vacuoles
colocalization of filaments
228Combined effects of different heavy metals: lead, copper, nickel and zinc upon Sesbania drummondii growth, metal accumulation and antioxidative system
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Heavy Metals and PhytoremediationIsrar, Mohd; Jewell, Amy; Sahi, Shivendra.Sesbania drummondii
heavy metal
Phytoremediation
antioxidative system
1869Comparative analysis of transcriptome and metabolite profiles in tomato introgression lines to identify candidate regulatory genes
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Secondary MetabolismLee, Je Min; McQuinn, Ryan; Cara, Beatriz; Fei, Zhangjun; Klee, Harry; Giovannoni, James J..carotenoid
transcriptome
tomato introgression line
2387Comparative enzymatic analyses of postharvest softening between apple genotypes
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Cell WallsMann, Harpartap; Tong, Cindy.Apple
Fruit softening
cell wall
Beta galactosidase
alpha L furanosidase
Polygalacturonase
219Comparative Functional Genomics Study of Genes Involved in Low Temperature Germinability
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Seed BiologyYuan, Joshua S.; Gealy, David R.; Stewart, Nathan R.; Campbell, Matthew A.; Stewart Jr., C. Neal.comparative functional genomics
low temperature germinability
seed germination
transcription factor
microarray
2589Comparative genetics and genomics in the Brassicaceae: the evolution of clubroot resistance
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Genome EvolutionSuwabe, Keita; Morgan, Colin; Bancroft, Ian.Arabidopsis thaliana
Brassica napus
Brassica rapa
linkage map
Microsatellites (SSRs)
514Comparative genomic sequence of downstream targets of Medicago CBF transcription factors reveals clusters of functional cis-acting low temperature regulatory elements 2kbp upstream of the coding sequences
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Temperature ResponsesPennycooke, Joyce C; Cheng, Hongmei; Stockinger, Eric J.cold acclimation
freezing tolerance
transcriptional regulation
gene regulation
comparative functional genomics
Medicago truncatula
Medicago falcata
272Comparative nanopeptidomics of Arabidopsis chloroplasts: An approach towards identification of in vivo substrates of an acylaminoacyl-peptidase
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Protein Modification and TurnoverFarrokhi, Naser; Whitelegge, Julian; Brusslan, Judy.peptidomics
chloroplast protease
2544Comparative phosphoproteomics of the soybean-Phytophthora sojae interaction: Immobilized metal affinity chromatography in identifying candidate phosphoproteins
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Emerging TechnologiesRamu Subramanian, Saravanan; Bhattacharyya, Madan Kumar.phosphoproteomics
plant pathogen interaction
492Comparative Thermotolerance in the Genus Boechera
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Environmental PhysiologyOrtmann, Leann.Boechera
Thermotolerance
heat stress
HSPs
sHSPs
866Comparing gene expression profiles from herbicide and pathogen treated soybean
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Plant-Pathogen InteractionsZhu, Jin; Patzold, William L.; Tranel, Patrick J.; Clough, Steven.Soybean
disease resistance
Photosynthesis
herbicide
2337Comparison between different expression systems for AbMV movement proteins in host and non host plants to study protein interactions
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Plant-Pathogen Interactionstanwir, fariha.AbMV
Protein expression
532Comparison of alkaloid production, gene transcripts in intact plants, suspended cell cultures and transgenic cells of Papaver somniferum
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Secondary MetabolismRhee, Hong Soon; Cho, Hwa-Young; Choy, Yoon-hi; Son, Seok Young; Park, Jeong Jin; Park, Jong moon.Papaver somniferum
Metabolite profile
genetic transformation
1847Comparison of Viral Suppressors of Silencing to Stabilize Transgene Expression
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Mechanisms of Gene RegulationDhillon, Taniya; Chiera, Joseph; Finer, John.GFP
Particle bombardment
Viral suppressors of silencing
1622Completing the Expression Catalog of the Arabidopsis Transcriptome by Quantitative Real Time PCR
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Large Scale Technologies and ResourcesUnderwood, Beverly; Xiao, Yongli; Redman, Julia; Wu, Hank; Wang, Wei; Moskal, William; Monaghan, Erin; Town, Christopher.transcriptome
promoter
expression
reporter
unknown
1039Compositional Analysis of Sclerotial Extracts from Divergent Fungi within Aspergillus Section Flavi
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Plant-Pathogen InteractionsMellon, J. E.; Boue, S.; Shih, B.; Cotty, P. J..Aspergillus section Flavi
aflatoxin B-1
sclerotia
melanin
1873Compositional Analysis of the Arabidopsis 26S Proteasome
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Protein Modification and TurnoverBook, Adam; Holmes, James; Lee, Sang Sook; Hansson, Maria; Vierstra, Richard.26S Proteasome
Affinity Purification
473Composition and Evolution of the Cold Shock Domain Proteins in Plants
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Temperature ResponsesThompson, Kari, B; Hasebe, Mitsuyasu; Karlson, Dale, T. cold shock domain
phylogenetics
evolution
cold acclimation
1780Compound leaf development in Medicago truncatula, a model legume
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Growth and Vegetative DevelopmentChen, Jianghua; Wen, Jiangqi; Wang, Hongliang; Li, Guangming; Chen, Rujin.compound leaf
Medicago truncatula
273Comprehensive analysis of intracellular communication between plastids and the nucleus using mutants defective in protein import receptors
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Organelle BiologyKakizaki, Tomohiro; Matsumura, Hideo; Terauchi, Ryohei; Inaba, Takehito.Chloroplast
108Computational Prediction of Abscisic Acid Responsive Promoters in Rice (Oryza sativa)
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Modeling and Computational BiologyRoss, Christian; Inzunza, Jose; Shen, Jeff.bioinformatics
rice
ABA
Signaling network
abiotic and biotic stresses
modeling
385ConiferEST: an integrated bioinformatics system for data processing and mining of conifer expressed sequence tags (ESTs)
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Modeling and Computational BiologyLiang, Chun; Wang, Gang; Lin, Liu.ConiferEST
bioinformatics
Expressed Sequence Tags
369Conservation and divergence of petal and stamen identity genes between Arabidopsis and Thalictrum, a basal eudicot
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Evolution of Development and PhysiologyDi Stilio, Verónica S.; Lauri, Andrea; Eiford, Laura L.; Horton, Melissa G.; Zachgo, Sabine.evo devo
Floral development
MADs box genes
APETALA3
B class genes
Thalictrum
Ranunculaceae
basal Eudicot
360Conserved evolution in duplicated genes among Arabidopsis, poplar and rice
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Genome EvolutionYang, Xiaohan; Tschaplinski, Timothy J; Gunter, Lee E; Jawdy, Sara; Tuskan, Gerald A.gene duplication
evolution
Arabidopsis
poplar
rice
ortholog
296Consistent and high expression of an E. coli derived phytase in three consecutive generations of transgenic maize seed
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Protein Targeting and Vesicular TraffickingWinslow, Stephanie; Miles, Stacy; Nelson, Andrea; Betts, Scott.protein expression in maize
enzymes
protein expression in maize seed
32Constitutively expressed ascorbate oxidase transgene is silenced in roots of N. tabacum
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Growth and Vegetative DevelopmentDe Tullio, Mario C.; Jiang, Keni; Sanmartin, Maite; Kanellis, Angelos K.; Feldman, Lewis J..ascorbate oxidase
quiescent center
root development
523Contrasting features of cell death in response to oxidative stress in marine and freshwater chlorophyte algae
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Oxidative StressChoi, Chang Jae; Berges, John A..Programmed Cell Death
oxidative stress
Metacaspase
1464Controlled total sterility for gene containment in genetically modified turfgrass
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Plant biotech & Risk AssessmentHu, Qian; Nelson, Kimberly; Oliver, Melvin J.; Kausch, Albert; Joel, Chandlee; Hong, Luo.gene containment
total sterility
turfgrass
FLP/FRT
260Control of spikelet meristem determinancy and transition to floral meristem by two INDETERMINATED SPIKELETS1 (IDS1)-like genes in rice
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Reproductive DevelopmentLee, Dong-Yeon; An, Gynheung.Spikelet
INDETERMINATE SPIKELETS1
inflorescence
AP2
1923Coordinated stress response in sugarcane: salicylic acid-, jasmonic acid- and pathogen-mediated defense genes are co-expressed with antioxidant and drought-responsive genes
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Plant-Pathogen InteractionsDamaj, Mona B.; Beremand, Phillip P.; Al-Douri, Abdulhamid F.; Silva, Marcelo A.; Jifon, John L.; Kumpatla, Siva P.; Reddy, A. Sam; Thomas, Terry L.; Mirkov, T. Erik.jasmonate signaling
salicylate signaling
signaling crosstalk
plant pathogen interaction
sugarcane
sorghum mosaic virus
drought response
oxidative burst
plant defense
1998Coupling of Tier 1 Research University summer research internships with academic year research experiences as model for MSI partnerships
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Education & OutreachPeer, Wendy; Murphy, Angus; Persans, Michael W.tier 1 research university
minority serving institution
research partnerships
program design
250Cowpea (Vigna unguiculata) Chloroplastic ATP Synthase is the Source of Multiple Plant Defense Elicitors During Insect Herbivory
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Plant-Pest InteractionsSchmelz, Eric A.; LeClere, Sherry; Carroll, Mark J.; Alborn, H; Teal, P.insect herbivory
peptide elicitor
ethylene
jasmonic acid
salicylic acid
plant-insect interaction
volatiles
1837CRY1 is Involved in Mediating Leaf Development in Response to Light Intensity
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PhotomorphogenesisYendrek, Craig R.; Li, Tsai-chi; Metzger, James.photomorphogenesis
cryptochrome
Leaf development
1320Cryptic variation in circadian function and flowering time in Arabidopsis
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RhythmsSalomé, Patrice A.; Weigel, Detlef.circadian clock
flowering time
Natural variation
1970Cuticular permeability differs between the standard and glossy genotypes of Brassica rapa
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Cell WallsLynch, Margaret; Trang, Phung; Guerra, Jacqueline.Brassica rapa
cuticle
wax
118Cyclic Electron Transport Protects against Moderate Heat Stress in Arabidopsis thaliana
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Photosynthesis(Light)Zhang, Ru; Sharkey, Thomas D..Photosynthesis
heat stress
cyclic electron transport
electrochromic shift
145CYP703: an ancient cytochrome P450 in land plants catalyzing the C-7 hydroxylation of lauric acid for sporopollenin formation in pollen
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Evolution of Development and PhysiologyMorant, Marc; Jørgensen, Kirsten; Schaller, Hubert; Pinot, Franck; Møller, Birger L.; Werck-Reichhart, Danièle; Bak, Søren.exine
pollen
cytochrome P450
2711Cysteine modifications of cytosolic enzymes as a means for signaling redox-imbalances to the nucleus?
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Intracellular SignalingHoltgrefe, Simone; van der Linde, Karina; Gohlke, Jochen; Wojtera, Joanna; Lindermayr, Christian; Scheibe, Renate.Glutathionylation
Nitrosylation
GAPDH, cytosolic
Aldolase, cytosolic
nuclear localization
Redox signaling
804Cytokinin (CK) levels and expression profiles of CK genes in developing maize caryopsis
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Seed BiologyRijavec, Tomaz; Kovac, Maja; Dermastia, Marina; Chourey, Prem.seed development
1968Cytokinin Induced Bud Formation in Physcomitrella requires Phospholipase C Activity
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Intracellular SignalingMarkus, Steven M; Tucker, Edward B.Cytokinin
physcomitrella
Calcium
phospholipase
IP3
410Cytokinin oxidase/dehydrogenase activity in oat xylem sap and its responses to exogenous nitrate
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Hormone BiologySýkorová, Blanka; Motyka, Václav; Raimanová, Ivana; Hoyerová, Klára; Trčková, Marie; Dobrev, Petre; Kamínek, Miroslav.Cytokinin
cis- and trans-zeatin
nitrate
root xylem sap
313Cytokinin Response Regulators in Populus: The As, Bs and Pseudos
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Hormone BiologyRamirez, Gustavo; Davis, John; Kirst, Matias.Cytokinin
Populus
response regulators
1368Cytokinins regulate chloroplast gene transcription in detached barley leaves
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Hormone BiologyZubo, Yan; Yamburenko, Maria; Selivankina, Svetlana; Shakirova, Farida; Avalbaev, Azamat; Kudryakova, Natalia; Zubkova, Natalia; Liere, Karlsten; Kusnetsov, Victor; Boerner, Thomas; Kulaeva, Olga.Cytokinin
chloroplast transcription
1102Cytokinin’s regulation of the nutriome
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Mineral NutritionMason, Michael; Mathews, Dennis; Salt, David; Schaller, G. Eric.
178Cytosolic Maltose Metabolism in Arabidopsis thaliana
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MetabolismSteichen, Jon; Sharkey, Thomas D..α-glucosidase
4-α-glucanotransferase
maltose metabolism
970DAWDLE, a forkhead-associated domain gene, regulates multiple aspects of plant development
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Cell-to-Cell and Long Distance SignalingChevalier, David; Morris, Erin; Walker, John.Arabidopsis thaliana
FHA domain
development
Phosphorylation
2667Deciphering the molecular genetics of floral symmetry in Dendrobium orchid
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Reproductive DevelopmentMudalige-Jayawickrama, Rasika; Kuehnle, Heidi.floral symmetry
Orchidaceae
cycloidea
transcription factor
TCP gene family
2318Defining the role of translation initiation factor eIF3h in Arabidopsis
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Mechanisms of Gene RegulationZhou, Fujun; Roy, Bijoyita; von Arnim, Albrecht.translation initiation
eIF3h
Arabidopsis
Translational Regulation
557Deletion and Duplication Detection in Arabidopsis using Tiling Arrays
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Emerging TechnologiesBaxter, Ivan; Williams, Rick; Emerson, JJ; Okamoto, Ken; Salt, David; Borevitz, Justin.Tiling arrays
Deletion mapping
Arabidopsis
1605Depletion of NbBPS1 causes uncontrolled cell proliferation in the vascular cambium and cell death in Nicotiana benthamiana
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Mechanisms of Gene RegulationKang, Yongwon; Kim, Ryong Nam; Cho, Hye Sun; Choi, Doil; Pai, Hyun-sook.cell division
cell death
2022Derepression of the NC80 motif is critical for the hotoactivation of Arabidopsis CRY2
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PhotomorphogenesisYu, xuhong; Dror, shalitin; liu, xuanming; Maymon, Maskit; Lopez, Javier; lin, chentao.cryptochrome
blue light
Arabidopsis
1950Desiccation tolerance of protoplasts and their regenerated cells of Marchantia polymorpha L
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Water RelationsSugawara, Yasutake; Htanaka, Rie; Sayama, Hideaki; Amagai, Hideki.
562Detecting circadian clock regulated transcription using genome tiling arrays
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Large Scale Technologies and ResourcesHazen, Samuel; Naef, Felix; Quisel, Thomas; Borevitz, Justin; Kay, Steve.Tiling arrays
circadian clock
85Detection and Quantitation of Genetically Modified Foods using Real Time PCR
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Emerging TechnologiesTewari, shikha; Goel, Sudhir.Real time PCR
GM foods
GMO
2723Determination of Plant Nuclear DNA Content by Flow Cytometry
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Bio-Energy CropsAl-Ahmad, Hani; Kania, Stephen A.; Trent, Dianne J.; Stewart Jr., C. Neal.flow cytometry
DNA content
genome size
copaiba tree
switchgrass
1591Determination of sterol species and levels that provide localized enhancement of electron transport rates in tobacco thylakoid membranes
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Photosynthesis(Light)Galante, Michael; MacLean, Brittany; Dean, Nathan; Papsidero, Tim; Carpenter, Caitlin; Becker, David; Grebenok, Robert.phytosterol
Photosynthesis
transgenic
tobacco
in vitro
photosynthetic electron transport
thylakoid
cholesterol
stigmasterol
832Determination of the Oligomeric State and Native Size of the Arabidopsis Proteases cGEP and cAAP
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Protein Modification and TurnoverKriezel, Heather K.; Kauk, Jennifer M.; Ngo, Stephani K.; Brusslan, Judy.
1964Determining plant water relations in a seasonally dry-tropical landscape in central Queensland, Australia: Implications for understanding koala (Phascolarctos cinereus) ecology
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Water Relationsjanuchowski, stephanie.Seasonal Dry Tropical Ecosystems
Seasonal Effects
Water relations
global change
phenology
Soil Moisture
Ground Water
1824Determining the Chloroplast Division Roles of the Two FtsZ Families in Arabidopsis thaliana
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Organelle BiologySchmitz, Aaron; Olson, Bradley; Yoder, David; Kadirjan-Kalbach, Deena; Osteryoung, Katherine.FtsZ
2332Developing a high-throughput, transient, cell-type-specific silencing system in Arabidopsis root protoplasts
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Growth and Vegetative DevelopmentBargmann, Bastiaan; Spyropoulou, Eleni; Deveau-Rosen, Jason; Birnbaum, Kenneth.Cell fate
transcriptomics
protoplasts
420Developing a method for quantitative comparison of molecular reporters among individual cells and determining the auxin level required for cell dedifferentiation in Arabidopsis
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Hormone BiologyKakani, Aparna; Chitteti, , Brahmananda Reddy; Hong, Waifoong; Peng, Zhaohua.auxin
1356Developing biotechnological tools to select beans with enhanced folic acid levels
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MetabolismShim, Youn-Seb; Garabagi, Frey; Pauls, K. Peter.Folic acid
gene expression
Phaseolus vulgaris
1982Developing Cotton Fibers as a Single-celled Genomics Platform for Studying Cell Morphogenesis
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Large Scale Technologies and ResourcesWilkins, Thea; Abidi, Noureddine; Hequet, Eric.Cotton fiber
microarray
474Developmental control of Arabidopsis seed oil biosynthesis
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MetabolismWang, Hongyun; Lin, Yun.Seed
oil
fatty acid
microarray
358Developmental steps in acquiring competence for shoot regeneration
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Growth and Vegetative DevelopmentChe, Ping; Lall, Sonia; Howell, S.H.organogenesis
Hormone signaling
shoot development
dedifferentiation
2395Development and Application of Gene Specific Molecular markers based on Polymorphic Diversities of Promoter Region
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Modeling and Computational BiologyJung, Woosuk; Kang, Kyung-Ho; Chung, Ill-Min; Jeung, Ji-Ung; Kim, Min Jin; Heo, Hwa-Young; Park, Na-Young; Roh, Kwang-Soo.gene-based markers
2690Development of a biological control system for rice blast disease (Magnaporthe grisea) in Nepal
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Plant-Pathogen InteractionsGharti-Chhetri, Gokarna; Olsson, Christer; Bimb, Hari; Olsson, Olof.biocontrol
Magnaporthe grisea
GFP
luxAB
934Development of a database for large scale reverse genetics
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Large Scale Technologies and ResourcesWilkerson, Curtis; Larson, Matt; Bomhof, Andrew; Lu, Yan; Savage, Linda J.; Last, Robert L..Arabidopsis 2010
systems biology
772Development of a linkage genetic map for chilling requirement in peach
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Growth and Vegetative DevelopmentFan, Shenghua; Bielenberg, Douglas; Zhebentyayeva, Tetyana; Reighard, Gregory; Abbott, Albert.Prunus
dormancy
Genetic markers
tree
bud
chilling requirement
1734Development of an interdisciplinary research course in biology and chemistry to study the phytotoxin herbarumin I
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Education & OutreachBlauth, Susan; Soulsby, David.interdisciplinary
Undergraduate research
Phytotoxin
1812
Canceled
Development of a Robot-Based Platform Applied to Simultaneous Root Growth Profiling of Seedlings Growing in a Petri Dish
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Emerging TechnologiesYazdanbakhsh, Nima; Fisahn, Joachim.root growth
Image processing
1092Development of a scalable extraction and purification strategy for MAbs and MAb-fusion proteins from transgenic Nicotiana benthamiana
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Plant biotech & Risk AssessmentLai, Huafang; Khalsa, Guruatma; Arntzen, Charles; Chen, Qiang.MAbs
purification
Plant-derived therapeutics
2284Development of functional transgenic tomato with hypotriglyceridemic action
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Emerging TechnologiesHung, Shu-Hsien; Liu, Chen-Huan; Ou, Zi-Da; Lin, Chin-Ho; Yu, Chih-Wen.
Ammonium Transporter 1
Peptide
tomato
Triglyceride
2398Development of rapid-cycling Brassica rapa as a model for teaching genetics
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Education & OutreachAmasino, Richard; Woody, Scott.
1791Development of resistance to maize streak virus (MSV) disease using peptide aptamers
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Plant biotech & Risk AssessmentMugutu, Allan Jalemba; Lopez-Ochoa, Luisa; Machuka, Jesse; Hanley-Bowdoin, Linda.maize
Maize streak virus
peptide aptamers
tissue culture
1197Development of stable isotope labeling methods for measuring protein turnover rates in plants.
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Protein Modification and TurnoverYang, XiaoYuan; Chen, WenPing; Gray, William M.; Cohen, Jerry D..protein
turnover rate
mass isotopomer distribution
2467Development of Tissue Culture-Based 'Hydroponics' Protocols for Use in Teaching
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Education & OutreachBosela, Michael.tissue culture
Mineral nutrition
hydroponics
1291Differential Effect of Aluminum on DNA Synthesis and CDKA Activity in Two Coffea arabica Cell Lines
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Growth and Vegetative DevelopmentValadez-González, Nina; Collí-Mull, Juan G.; Brito-Argáez, Ligia; Muñoz-Sánchez, J. Armando; Zúñiga-Aguilar, José J.; Castaño de la Serna, Enrique; Hernández-Sotomayor, S.M. Teresa.Coffea arabica
Aluminum
DNA synthesis
Cyclin-dependent kinase
540Differential effects of mechanical wounding and herbivory on the leaf proteome of potato, Solanum tuberosum
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Plant-Pest InteractionsDuceppe, Marc-Olivier; Cloutier, Conrad; Desjardins, Yves; Michaud, Dominique.Potato (Solanum tuberosum)
herbivory
Mechanical wounding
Colorado potato beetle
Photosynthesis
proteomics
Real time PCR
2668Differential expression of genes in soybean in response to Asian soybean rust (Phakopsora pachyrhizi Sydow) is specific to the soybean growth stage
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Plant-Pathogen InteractionsPanthee, Dilip; Yuan, Joshua S.; Wright, David; Marois, James; Stewart Jr., C. Neal.microarray
Soybean
1047Differential expression of gibberellin, abscisic acid and ethylene biosynthesis genes is associated with lettuce seed thermodormancy
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Seed BiologyDahal, Peetambar; Argyris, Jason; Bradford, Kent J..seed germination
temperature
ABA
GA
ethylene
1307Differential functions of alkaline and neutral invertases connected with environmental stress responses in wheat leaves
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MetabolismVargas, Walter A.; Pontis, Horacio G.; Salerno, Graciela L..
1549Differential transcript regulation in the growth zone of the maize primary root during early stages of adaptation to water deficit
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Environmental PhysiologyChen, Kegui; Valliyodan, Babu; Joshi, Trupti; Hejlek, Lindsey; LeNoble, Mary; Xu, Dong; Bohnert, Hans; Sharp, Robert; Nguyen, Henry.Zea mays
primary root
water deficit
early response
gene expression
microarray
967Differentiated functions of acid phosphatases in white lupin plants are suggested from expression analysis
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Mineral NutritionWasaki, Jun; Maruyama, Hayato; Tanaka, Miho; Yamamura, Takuya; Shinano, Takuro; Ito, Susumu; Osaki, Mitsuru.phosphatase
phosphorus deficiency
white lupin
LASAP2
34Digging into the Plant Proteome
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Emerging TechnologiesSikora, Sergey; Lei, Huang; Xiangming, Fang; Wei-Wei, Zhang.Plant
proteomics
depletion
rubisco
LC-MS/MS
2D-gel
biomarkers
174Discovery and Applications of the Cyclotides: Circular Knotted Plant Proteins
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Protein Modification and TurnoverCraik, David J.cyclotides
host defence peptide
antimicrobial peptide
insecticide
plant-insect interaction
structural biology
467Dissecting the genetic control of folate homeostasis in plants
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MetabolismGonzalez-Jorge, Sabrina; Mehrshahi, Payam; Bennett, Malcolm J..Folate homeostasis
Genetic screens
Folate analogs
134Dissecting the role(s) of PR 10 proteins by transcriptional profiling
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Hormone BiologyKrishnaswamy, Sowmya; Srivastava, Sanjeeva; Mohammadi, Mohsen; Rahman, Muhammad; Deyholos, Michael K.; Kav, Nat N. V..Cytokinin
Pathogenesis-related proteins
PR 10
transcriptional profiling
microarrays
2074Dissecting the roles of ABA, JA and ethylene in early Nod factor signaling events in Medicago truncatula
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Plant-Symbiont InteractionsYendrek, Craig R.; Harris, Jeanne M..Medicago truncatula
Nod factor signaling
Hormone crosstalk
482Dissection of Calcium Signalling Pathways in the Arabidopsis Circadian Clock
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RhythmsHubbard, Katharine; Dodd, Antony; Gardner, Michael; Hotta, Carlos; Dalchau, Neil; Davies, Julia; Webb, Alex.Arabidopsis
circadian
Signalling
Calcium
cADPR
2301Dissection of GA/ABA signaling pathways in cereal aleurone cells via chemical genetics
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Hormone BiologyLin, Wan-chi; Ho, Tuan-hua David.GA
ABA
Hormone signaling
chemical genetics
2694Dissolved inorganic carbon concentration mechanism in the chloroplasts of Dunaliella: Induction and suppression of LCI-45 and LCI-47
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Photosynthesis(Carbon)Goyal, Arun.Carbon metabolism
428Distinct epigenetic states of sequences in promoter and intron produce tissue-specific expression patterns of a Myb transcription factor in maize
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EpigeneticsSekhon, Rajandeep; Chopra, Surinder.maize
myb
tissue-specific
epiallele
213Distinctive antioxidant profiles: toward the biological role of the Arabidopsis thi1 in organellar genome stability
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Oxidative StressMomoli, Marisa M; Van Sluys, Marie-Anne.antioxidant enzymes
sugars
Arabidopsis thaliana
thi1
181Distribution of Thioredoxins f and m Relative to Six Target Enzymes in Pea Leaf Chloroplasts
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Photosynthesis(Carbon)Anderson, Louise E.; Fadowole, Deborah; Reyes, Bessie A.; Carol, Andrew A..co-localization
light-activation
nearest neighbor analysis
Pisum sativum
thioredoxin
459Divergence in plant gene expression because of elevated atmospheric O3 and CO2 and their affect on host- pathogen interactions
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Plant-Pathogen InteractionsBilgin, Damla; Clough, Steven; De Lucia, Evan.gene expression
plant-virus interaction
global change
Soybean
1562Does Arabidopsis have translesion syntheses?
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Environmental PhysiologyNakagawa, mayu; Sakamoto, Ayako; Takahashi, shinya; Tanaka, Atsushi; Narumi, Issay.translesion syntheses
mutation
UV
429Does increased daily carbon assimilation coupled with a higher Leaf Area Index and longer growing season explain the difference in productivity between two potential bioenergy crops?
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Bio-Energy CropsDohleman, Frank G.; Heaton, Emily A.; Leakey, Andrew D.B.; Long, Stephen P..bioenergy crops
Miscanthus x giganteus
switchgrass
760Does isoprene play a role in the adaptation of leaves to elevated leaves of ultraviolet radiation by modulating the intra-foliar generation of reactive oxygen species (ROS)?
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Oxidative StressBarta, Csengele; Brilli, Federico; Fortunati, Alessio; Behnke, Katia; Schnitzler, Joerg-Peter; Loreto, Francesco.isoprene
reactive oxygen species
oxidative stress
Ultraviolet radiation
stress resistance
1867Does water deficit cause a switch from sink to potential source of soluble carbohydrate by xylem parenchyma cells in cotton?
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Environmental PhysiologyRoper, Becky.starch synthase
209Down-regulation of a novel small gene confers a starch excess phenotype in Arabidopsis
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MetabolismLi, Ling; Nettleton, Dan; Wurtele, Eve.gene expression
starch excess
novel small gene
starch synthase
microarray
987Down-regulation of cinnamyl alcohol dehydrogenase and its impacts on lignin and forage quality in alfalfa (Medicago sativa)
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Secondary MetabolismShadle, Gail L.; Chen, Fang; Jackson, Lisa A.; Dixon, R. A..lignin
cinnamyl alcohol dehydrogenase
CAD
forage quality
monolignols
Medicago sativa
legume
1362Drought induced gene expression in Citrullus colocynthis
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Environmental PhysiologySi, Ying; Dane, Fenny.drought stress
cDNA-AFLP
gene expression
Citrullus colocynthis
real-time RT-PCR
128Drought tolerance induced by the autoregulated biosynthesis of cytokinins
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Oxidative StressRivero, Rosa M; Mitler, Ron; Sakakibara, Hitoshi; Gepstein, Shimon; Gepstein, Amira; Blumwald, Eduardo.drought and cytokinins
366During Biogenesis of Nucellus Cells in Developing Seeds, Arabidopsis Protein Disulfide Isomerase 5 Traffics Together with Cysteine Proteases to Protein Storage and Lytic Vacuoles
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Seed BiologyOndzighi-Assoume, Christine Andeme; Christopher, David A.; Cho, Eun-Ju; Shoeng-Chang, Shu; Staehelin, L. Andrew.seed development
1684Dynamic mineral partitioning in diverse Arabidopsis thaliana accessions; the ysl1ysl3 mutant fails to distribute Cu, Fe, and Zn normally in vegetative tissues, fruits, and seeds
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Mineral NutritionWaters, Brian M.; Grusak, Michael A..iron
Copper
Zinc
senescence
1942Earlier greenhouse flowering of dormant rhododendron and azalea cultivars indicated by a decreased chlorophyll a fluorescence
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Reproductive DevelopmentBallantyne, David J..Azalea
flowering
chlorophyll fluorescence
Fv/Fm
111Early signals in the wound response of Arabidopsis thaliana
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Oxidative StressMorker, K H; Roberts, M R.reactive oxygen species
wounding
Arabidopsis thaliana
light
320Echinacea contains metabolite(s) that activate the mammalian TRPV1 transient pain receptor
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Membrane TransportWu, Lankun; Leng, Qiang; Escalera, Jasmine; Jordt, Sven-Eric; Hebert, Steven; Wurtele, Eve.Echinacea
TRPV1
pain
ion channel
2171Ecological Risk Assessment for Herbicide-Resistant Creeping Bentgrass: A Case Study
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Plant biotech & Risk AssessmentAuer, Carol.ecological risk assessment
1615Ectopic Expression of a Novel Mitochondria-localized Purple Acid Phosphatase Alleviates Oxidative Stress Induced by Salinity and Drought Treatments
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SalinityLi, Wing-Yen Francisca; Lam, Hon-Ming.PAP
oxidative stress
salinity
177EDM2, a novel transcriptional regulator mediating disease resistance in Arabidopsis thaliana
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Plant-Pathogen InteractionsTsuchiya, Tokuji; Wei, Yu-Hung Linda; Eulgem, Thomas.disease resistance protein
transcription factor
409Effect of ethylene and polyamines on gene expression of pathogenesis-related proteins against biotic stress
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Plant-Pathogen InteractionsWi, Soo Jin; Park, Ky Young.ethylene
polyamine
Pathogenesis-related protein
biotic stress
1334Effect of low cost physical technologies on fungal decay and expression of pathogenesis-related-protein genes in table grapes stored at low temperature
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Plant-Pathogen InteractionsRomero, Irene; Fernandez-Caballero, Carlos; Goñi, Oscar; Escribano, M. Isabel; Merodio, Carmen; Sanchez-Ballesta, M. Teresa.expression patterns
Glucanase
Chitinase
Vitis vinifera
elevated co2
recombinant protein
345Effect of Maize SBE I on thhe nature of the alpha polyglucan produced in Synechocystis sp. PCC 6803
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MetabolismPieris, Shayani; Li, Li; Jane, Jay-lin; Spalding, Martin.Maize SBE I
Semi-crystalline Amylopectin
starch
glycogen
Synechocystis
1862Effect of the integration of multiple genes of the phenylpropanoid pathway into soybean
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Metabolic EngineeringZernova, Olga; Lygin, Anatoliy; Widholm, Jack; Lozovaya, Vera.multi-gene-stacking
phenylpropanoids
Soybean
transformation
1665Effects of abscisic acid and ethylene on competence acquisition for root apical meristem conversion of Catasetum fimbriatum into buds
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Hormone BiologyRodrigues, Maria Aurineide; Freschi, Luciano; Purgatto, Eduardo; Kerbauy, Gilberto Barbante.ethylene
Abscisic Acid
root apical meristem
Catasetum fimbriatum
220Effects of Coinage Metals on Ethylene Binding and Action in Arabidopsis
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Intracellular SignalingBinder, Brad M.; Rodgriguez, Fernando I.; Bleecker, Anthony B.; Patterson, Sara E..ethylene
Signal transduction
receptors
2482Effects of elicitation on the production of Lycopene in callus culture of Barringtonia racemosa
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MetabolismBehbahani, Mandana.
2320Effects of Gene Knockouts that Function in the siRNA Biogenesis Support the Role of RNA Interference (RNAi) Pathway in the Brome Mosaic Virus RNA Recombinant Formation in Arabidopsis thaliana.
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Plant-Pathogen InteractionsDzianott, Aleksandra; Bujarski, Jozef.RNA viruses,
genetic RNA recombination
RNA interference
2219Effects of Initial Conditions on Arabidopsis Root Gravitropism Determined by Computer-Vision-Based Morphometric Profiling
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TropismsMiller, Nathan D.; Durham, Tessa L.; Spalding, Edgar.Image processing
gravitropism
high throughput
Morphometrics
1620Effects of smut fungus infection on the early successional grass Andropogon virginicus
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Plant-Pathogen InteractionsRomanchuk, Artur; Morrison, Janet.Andropogon virginicus
smut fungus
1416Effects of the Transgene Size on Transgene Expression in Transgic Plants
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EpigeneticsLuo, Zhenghua; Chen, Zhixiang.transgene size
transgene expression
923Electrical Signaling in Aloe Vera Induced by Localized Thermal Stress
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Intracellular SignalingVolkov, Alexander; Lang, Ryan; Volkova, Maia; Osei, Albert.Action potential
Electrophysiology
922Electrophysiology of Venus flytrap (Dionaea muscipula Ellis)
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Intracellular SignalingVolkov, Alexander; Adesina, Tejumade; Jovanov, Emil.Venus flytrap
Action potential
Electrophysiology
Ion Channels
378Elevated CO2 increases susceptibility of soybean to natural herbivores by defeating induction of cysteine proteinase inhibitors.
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Global ChangeZavala, Jorge; Casteel, Clare; Berenbaum, May; De Lucia, Evan.global change
defense
cysteine proteinase inhibitors
Soybean
plant-insect interaction
insect herbivory
1992Elucidating a role for sphingolipids in plant development
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Reproductive DevelopmentHolland, Jennifer J.; Celaya, R. Brandon; Barr, Jason; Liscum, Mannie; Alexander, Stephen.ceramide
sphinganine-1-phosphate
1390Elucidating the functions of rre1 in the plant immune response in Arabidopsis thaliana
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Plant-Pathogen InteractionsGoff, Kerry.chitin
2132Elucidating the Physiological Mechanism for Mesotrione-Atrazine Synergism in Triazine-Sensitive and Triazine-Resistant Redoot Pigweed (Amaranthus Retroflexus)
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Integrative Plant PhysiologyHugie, Josie; Zhu, Xin-Guang; Long, Stephen P.; Riechers, Dean.herbicide joint action
mesotrione
Atrazine
chlorophyll fluorescence
synergism
PSII inhibitor
HPPD inhibitor
interaction
868Elucidating the roles of BELL homedomain transcription factors, PENNYWISE and POUNDFOOLISH, during reproductive development in Arabidopsis thaliana.
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Reproductive DevelopmentBecerra, Benjamin Joseph; Bhattacharya, Monideepa; Junqueira, Ricardo; Kanrar, Siddhartha; Smith, Harley.floral induction
Phase transition
meristem
flowering
825Elucidation of the ABC model in the basal eudicot Aquilegia (columbine) using a protein-protein interaction approach
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Evolution of Development and PhysiologyHolappa, LD; Gould, BA; Kramer, Elena M.Aquilegia
MADs box genes
1851Elucidation of the primary stress induced signal transduction pathways in Arabidopsis
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Integrative Plant PhysiologyWalley, Justin; Gopalan, Banu; Coughlan, Sean; Dehesh, Katayoon.stress
microarray
wounding
1484Elucidation of the structure and architecture of the flavonoid multi-enzyme complex
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Secondary MetabolismBowerman, Pete A.; Winkel, Brenda S. J..flavonoid
protein-protein interaction
TAP-tagging
421Endocytic uptake and traffic of sucrose linked to both starch and cellulose biosynthesis are processes specifically triggered by sucrose that require the synthesis de novo of proteins
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MetabolismBaroja-Fernandez, Edurne; Munoz, Francisco Jose; Etxeberria, Ed; González, Pedro; Ezquer, Ignacio; Pozueta-Romero, Javier.endocytosis
sucrose
starch
Cellulose biosynthesis
173Endophyte assisted phytoremediation of Trichloroethylene(TCE) by Sweet potato plants
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Heavy Metals and Phytoremediationkhan, zareen; doty, sharon.Phytoremediation
endophytes
sweet potato
trichloroethylene
1586Engineering nematode-resistant tomato with stacking of cystatin and chitinase genes
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Plant-Pathogen InteractionsChan, Yuan-Li; Chan, Ming-Tsair; Yeh, Kai-Wun.Cystatin
Chitinase
root knot nematode
tomato
synthetic promoter
470Enhanced carotenoid accumulation as a result of alteration of metabolic sinks in transgenic plants
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Metabolic EngineeringLopez, Alex; Van Eck, Joyce; Conlin, Brian; Paolillo Jr, Dominick; Li, Li.carotenoids
metabolic sink
2505Enhanced polyamine metabolism and sulfur amino acids in poplar cells
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MetabolismSmita, Smita; Minocha, Rakesh; Minocha, Subhash.polyamine
1599Enhanced tolerance to drought and ozone stress in PsAPX transgenic rice
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Plant biotech & Risk AssessmentPark, Hyang-Mi; Kim, Yul-Ho; Shin, Dong-Bum; Choi, Man-Soo; Lee, Jang-Yong.stress tolerance
Transgenic rice
2576Enhanced tolerance to high temperature stress in transgenic tomato expressing bacterial panD gene
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Environmental PhysiologyRathinasabapathi, Bala; Wu, Shan; Sundaram, Sabarinath.stress resistance
95Enhancing cytosolic ADP-glucose synthesizing sucrose synthase activity in transgenic potato tubers results in increased starch content
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MetabolismBaroja-Fernandez, Edurne; Munoz, Francisco Jose; Moran-Zorzano, Maria Teresa; Allocati, Juan Pablo; Etxeberria, Ed; Alonso-Casajus, Nora; Pozueta-Romero, Javier.energy crop
starch
carbohydrate metabolism
1853Environmental and ecological controls on gene expression of root processes in prairie plants
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Environmental PhysiologySurabhi, Giridara-Kumar; Sanjay, Kumar; Dan, DeLaughter; Katie, Clowers; Alam, Nausheen; Loretta, Johnson; Shah, Jyoti.Big bluestem
gene expression
microarray
Nitrogen
Grass
2197Environmental Effects on Seed Size and Effects of Seed Size on Seedling Development in Arabidopsis
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Seed BiologyElwell, Angela; Durham, Tessa L.; Miller, Nathan D.; Spalding, Edgar.environmental effects
seed size
seedling development
303ESK1 Is a Novel Component of Freezing Tolerance
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Temperature ResponsesXin, Zhanguo; Chen, Junping.freezing tolerance
drought tolerance
salinity tolerance
microarray
336Establishing In vitro Cultures of Moraceae Species for the Production of Phytoestrogens
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Secondary MetabolismVibhu, Bakshi; Maier, Camelia; Smith, Don W..phytoestrogens
tissue culture
2481Establishment of Barringtonia racemosa regeneration from leaf explants
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Growth and Vegetative DevelopmentBehbahani, Mandana.
1336Establishment of transgenic anthocyanin-producing tissue culture over-expressing a R2R3-MYB trascriptional factor
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Secondary Metabolismzhou, lili; zeng, hainian; shi, mingzhu; xie, deyu.PAP 1
transgenic
transcription factor
R2R3-MYB
HPLC
25Estimating long-distance phloem behavior with sieve-element targeted, fluorescence labeled membrane proteins
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Integrative Plant PhysiologyThompson, Matthew V.; Wolniak, Stephen M..phloem
sieve plate
sieve element
anatomy
fluid mechanics
intercellular protein targeting
companion cell
plasmodesmata
1208Ethylene-induced stem growth is correlated with altered expression of the genes encoding gibberellin- and ABA- metabolism enzymes in the internode of deepwater rice
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Integrative Plant PhysiologyChoi, Dongsu; Yang, Seung-Hwan.deepwater rice
stem growth
gibberellin
ABA
ethylene
1955Ethylene negatively regulates lateral root development in Arabidopsis thaliana
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Hormone BiologyNegi, Sangeeta; Williams, Benjamin; Ivanchenko, Maria; Muday, Gloria K.auxin
ethylene
lateral root
1596Ethylene Regulation of Gravitropic Curvature in Arabidopsis Stems
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TropismsBrown, Mia; Harrison, Marcia.ethylene
gravitropism
Acc synthase
935Etioplast and POR protein-associated changes in nuclear gene expression
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PhotomorphogenesisBarbieri, Rosario; Armstrong, Greg.etioplast
microarray
POR
304ETR1 Histidine Kinase Activity of Arabidopsis Promotes Plant Growth
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Hormone BiologyYoo, Sang-Dong; Cho, Young-Hee; Sheen, Jen.ETR1 Histidine Kinase
protein kinase signaling
growth
1864Evaluating dehydrin expression in Arabidopsis thaliana
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Environmental PhysiologyKoehler, Gage; Randall, Stephen.
1848Evidence for race-specificity in resistance to grape powdery mildew
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Plant-Pathogen InteractionsCadle-Davidson, L..
914Evidence for stress induced in vivo metabolic flux of 2-phenylethyl glucosinolate in Nasturtium officinale R. Br
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Secondary MetabolismWong, Lynette Y.; Cohen, Jerry D.; Markhart, Albert.glucosinolate
Water stress
metabolic flux
Plant secondary metabolism
2H20
329Evolution and Diversity of Invertase Genes in Populus trichocarpa
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Genome EvolutionBocock, Philip; Dervinis, Chris; Davis, Jonh.Populus
Invertase
Colinearity
2293Evolution and Function of Vicilin Genes from Wild Louisiana Legumes
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Seed BiologyXie, Zhongyu; Neigel, Joe; Chlan, Caryl.vicilin
evolution
389Evolutionary and Ecological Aspects of Selenium Hyperaccumulation
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Heavy Metals and PhytoremediationFreeman, John L.; Quinn, Colin F.; Galeas, Miriam L.; Pilon-Smits, Elizabeth A.H..Selenium Hyperaccumulation
evolution
Phytotoxicity
Tolerance
Elemental Defense
Biotransformation
Se fluxes in troposheres
511Evolutionary History and Stress Responsiveness of Plant Receptor-Like Kinases
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Evolution of Development and PhysiologyLehti-Shiu, Melissa; Shiu, Shin-Han.receptor kinase
abiotic stress
biotic stress
evolution
gene family
Stress response
gene duplication
1893Evolutionary Relationship and Directional Selection of Seed Storage Proteins
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Modeling and Computational BiologyCannon, Nathaniel; Cardwell, Jonathan; McClellan, David; Coleman, Craig.seed storage protein
phylogenetic analysis
adaptive selection
gene duplication
gene family evolution
266Evolution of an enhancer region that regulates PETAL LOSS expression in the perianth of the Arabidopsis flower
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Evolution of Development and PhysiologyKilinc, Aydin; Smyth, David R.perianth
PETAL LOSS
retrotransposon
Brassicales
tetramery
Arabidopsis
2693Evolution of POT genes in plants
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Evolution of Development and PhysiologyShakirov, Eugene V.; Song, Xiangyu; Zanis, Michael; Croy, Johnny; Wuttke, Debbie; Shippen, Dorothy E..telomere
evolution
1614Evolution of the AP1/FUL MADS-box gene lineage and their function in flower development 
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Evolution of Development and PhysiologyMohamed, Abeer; McElhinny, Elaine; Litt, Amy.MADS-box gene
gene function
ABCE floral genes
floral evolution
2157Examination of the Arabidopsis RUB E1
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Protein Modification and TurnoverHotton, Sara; Bostick, Magnolia; Callis, Judy.AXR1
AXL1
RUB activating enzyme
237Exceptional longevity of fruits of Nelumbo nucifera: heat-hardy (100oC) proteins
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Seed BiologyShen-Miller, J.; Xie, Y.; Wooding, K.; Yang, Y.; Villa, S.; Zhang, H.; Lindner, P.; Loo, J.; Clarke, S..longest-living fruits
Nelumbo nucifera
Heat-stable proteins
defence- and repair-related proteins
1457Excision of the piggyBac transposable element in maize cells is a precise event
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Mechanisms of Gene RegulationJohnson, Eric T.; Dowd, Patrick F..piggyBac
Transposons
maize
590EXECUTER1- and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana
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Oxidative StressKim, Chanhong; Lee, Keunpyo; Landgraf, Frank; Apel, Klaus.singlet oxygen retrograde signaling
351Experimental comparison of pre-mRNA splicing between flowering plant lineages
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Mechanisms of Gene RegulationWright, Janet D; Schoenbeck, Mark.gene regulation
intron splicing
intron identification
1343Exploration of the diverse roles of PNPase using the TILLING approach
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Organelle BiologyGermain, Arnaud; Stern, David.Chloroplast
RNA processing
TILLING
1991Exploring metabolism in pea seedlings and potato tuber tissues using a simple respirometer
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Education & OutreachHelm, Kenneth W..education
metabolism
seed germination
2492Exploring the early events of root gravity and touch signal transduction with a proteomics approach
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TropismsNeal, Carolyn O.S.; Yang, Peizhen; Masson, Patrick H.; Craig, Elizabeth A..gravitropism
mechanosensation
Signal transduction
552Exploring the mechanisms by which the Autonomous Pathway functions in development
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Mechanisms of Gene RegulationVeley, Kira; Michaels, Scott D..flowering time
gene regulation
fpa
genetics
548Expression analysis of DREB related gene, TaDRF1, in two cultivars of bread hweat under water stress condition
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Water Relationssharma, sandeep.
175Expression and in vitro Characterization of Eight Medicago truncatula (Iso)flavonoid Glycosyltransferases
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Secondary MetabolismBlount, J. W.; Modolo, L. V.; Achnine, L.; Dixon, R. A..glycosyltransferase
Medicago truncatula
HPLC
enzyme assays
UDP-glucose
isoflavonoid
flavonoid
1096Expression levels of genes involved in lignin biosynthesis in the internodes of switchgrass (Panicum virgatum)
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Bio-Energy CropsStarostka, Lindsey; Vivian, Lindsay; Twigg, Paul.bioenergy
energy crop
biomass/energy
1702Expression of a foreign Rubisco small subunit in tobacco with reduced levels of the native protein
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Photosynthesis(Carbon)Stessman, Dan; Portis, Archie, R.rubisco
RNAi
tobacco
1439Expression of an Anthranilate Synthase from Maize Mutant bf-1 in Maize Line HiII
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Plant biotech & Risk AssessmentPinkerton, T. Scott; Dowd, Patrick F..Anthranilate
5' methyl-tryptophan (5MT)
non-antibiotic marker
268Expression of an Arabidopsis vacuolar H+-pyrophosphatase gene (AVP1) in cotton to increase tolerance to drought and salt stresses
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SalinityPasapula, Vijaya; Kuppu, Sundaram; Shen, Guoxin; Gaxiola, Roberto; Zhang, Hong.AVP1
salinity
Drought
Cotton
2323Expression of Arabidopsis Drg genes. Promoter::GUS fusions, quantitative RT-PCR and patterns of protein accumulation
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Mechanisms of Gene RegulationStafstrom, Joel.GTP binding protein
852Expression of ATHB40, an Arabidopsis class I HD-Zip gene
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Growth and Vegetative DevelopmentShin, Yun Jeong; Song, Kyu-Youn; Yuji, Lian; Kim, Mi-Ran; Cheon, Choong-Ill.AHTB40
1183Expression of AtPUB22 and AtPUB23, which encode a U-box E3 Ubiquitin Ligase, alter the plant’s response to abiotic stress in Arabidopsis
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Water RelationsRyu, MoonYoung; Cho, Seok Keun; Son, ORa; Kim, Woo Taek.E3 ubiquitin ligase
abiotic stress
AtPUB22
AtPUB23
1410Expression of avian flu antigen for bird immunization
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Plant biotech & Risk AssessmentBorisjuk, Nikolai; Hensel, G.; Kumlehn, Jochen; Golovkin, Maxim; Spitsin, Sergei; Andrianov, Vyacheslav; Pogrebnyak, Natalia; Smirnov, Yuri; Brodzik, Robert; Matyszczuk, Paulina; Koprowski, Hilary.avian flu
barley seeds
antigen
transient expression
458Expression of branched chain fatty acid genes in Arabidopsis
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MetabolismYu, Xiaomin; Jin, Yuqin; Nikolau, Basil; Wurtele, Eve.fatty acids
81Expression of CO and FT during floral induction and reversion in response to photoperiod in Impatiens balsamina
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Reproductive DevelopmentBanda, Eric; Roden, Laura C..Impatiens balsamina
photoperiodism
floral induction
floral reversion
circadian
2222Expression of genes enconding for xyloglucan and sucrose metabolism in seedlings of the tropical legume tree Hymenaea courbaril is controlled by light, auxin and sugars.
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Mechanisms of Gene RegulationBrandão, Aline; Vincentz, Michel; Buckeridge, Marcos.gene expression
sucrose metabolism
xyloglucan
Hymaneae courbaril
2093Expression of putative arsenite effluxers in Pteris vittata
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Heavy Metals and PhytoremediationIndriolo, Emily; Salt, David; Banks, Jo Ann.Arsenic
Pteris vittata
737Expression of Red Light-induced RNA-binding Proteins and Potential Association of a Phytochrome-like Protein in Chlamydomonas reinhardtii
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Photosynthesis(Light)Olave, Marcella; Alizadeh, Darya; Cohen, Amybeth.Phytochrome
nuclear and chloroplast DNA analysis
1029Expression of sugar transporter HXT2 from Saccharomyces cerevisiae in Arabidopsis thaliana leads to modificate the metabolism and distribution of photosynthates in whole plant
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MetabolismPadilla-Chacón, Daniel; Martinez-Barajas, Eleazar.phothosynthates
metabolic sink
1011Expression of the Anti-cocaine Antibody Fab Fragments in Chlamydomonas reinhardtii
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Plant biotech & Risk AssessmentNguyen, Vincent; Olave, Marcella; Cohen, Amybeth.antibody genes in plants
2073Expression of Therapeutic Proteins in Tobacco BY-2 Cell Suspension Culture
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Protein Targeting and Vesicular TraffickingAhmad, Adil; Menassa, Rima.recombinant protein
secretion
trafficking
BY-2
calli
ELP
1582Expression pattern of cold induced genes in Phalaenopsis amabilis
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Temperature ResponsesPeng, Po-Hsin; Lin, Tsai-Yun.Phalaenopsis amabilis
Stress response
197Expression profile of eight (iso)flavonoid-glycosyltransferase from Medicago truncatula and biochemical characterization of UGT78G1
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Secondary MetabolismModolo, L. V.; Blount, J. W.; Wang, X.; Dixon, R. A..glycosyltransferase
flavonoids
gene expression
Medicago truncatula
2014Expression profiling and gene silencing reveal that monolignol biosynthesis plays a critical role in epidermal defense in wheat in response to powdery mildew attack
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Plant-Pathogen InteractionsBhuiyan, Nazmul H.; Wei, Yangdou; King, John.lignin
cell wall appositions
disease resistance
1929Expression profiling of the cotton fiber transcriptome reveals preferential linkage of ubiquitin-proteasome genes to fiber QTL in Pima cotton (Gossypium barbadense L.)
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Organelle BiologyAlabady, Magdy; Wilkins, Thea.Functional genomics
Cotton fiber
cell wall
E3 ubiquitin ligase
Fiber QTL
microarray
transcriptome
Pima
1696Expression Quantification of Genes Associated with Cyanogenic Glucosides in Cassava
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Secondary MetabolismEcheverry-Solarte, Morgan; Figueroa, Annette; Siritunga, Dimuth.cassava
gene expression
cyanide
1781Extracellular 14-3-3 Proteins: Role in Root Tip Resistance to Fungal Infection
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Plant-Pathogen InteractionsWen, Fushi; Rivera-Curlango, Gilberto; VanEtten, Hans D.; Hawes, Martha C..extracellular 14-3-3 protein
border cell
disease resistance
1109Extraction of Azadirachtin from Meristematic Callus Cultures of Sentang (Azadirachta. Excelsa [Jack] Jacobs)
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MetabolismMihiret, A Yohannes; Saleh, M Norihan; Kodiswaran, I Kandasamy.Azadirachta excelsa
Azadirachtin
meristematic cali
2313Extracts Purified from Chinese Puer Tea Induce Cell Death of Human Breast Cancer Cell Line MCF-7
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Mitosis/MeiosisZhang, Crystal S..Puer Tea
apoptosis
1329Extremely long survival of a pseudogene and the mystery of RNA editing in liverwort mitochondria
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Organelle BiologyWahrmund, Ute; Ruedinger, Mareike; Polsakiewicz, Monika; Groth-Malonek, Milena; Knoop, Volker.mitochondria
RNA editing
liverworts
phylogenetics
434Farnesylcysteine lyase in Arabidopsis thaliana
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Protein Modification and TurnoverHuizinga, David; Deem, Angela; Trobaugh, Corey; Denton, Ryan; Sen, Stephanie; Crowell, Dring.ABA
Arabidopsis
farnesylcysteine
farnesylcysteine lyase
isoprenoid recycling
protein prenylation
2259Female gametophytic mutant impaired in final stages of pollen tube guidance
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Reproductive DevelopmentHuang, Yiding; Palanivelu, Ravishankar.Female gametophytic mutant
pollen tube guidance
465Ferredoxin-1 involvement in the regulation of plant innate immunity via production of active oxygen species in Arabidopsis
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Plant-Pathogen InteractionsFeng, Teng-Yung; Huang, Hsiang-En.ferredoxin
AOS
Signal transduction
disease resistance
452Flavone synthases from Medicago truncatula are flavanone-2-hydroxylases and are important for nodulation
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Plant-Symbiont InteractionsZhang, Juan; Subramanian, Senthil; Zhang, Yansheng; Yu, Oliver.Medicago truncatula
nodulation
flavone synthase
flavanone-2-hydroxylase
176Flavonoids are differentially taken up, converted to downstream products, and transported long distances in the Arabidopsis tt4 mutants
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Secondary MetabolismBuer, Charles S; Muday, Gloria K; Djordjevic, Michael A.flavonoid movement systems
aglycone
1316Flax Bast Fibers : Structure and Developmental Regulation
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Cell WallsDay, Arnaud; Addi, Mohamed; Cronier, David; Nolin, Frederique; Habrant, Anouck; Grec, Sebastien; Neutelings, Godfrey; Chabbert, Brigitte; Hawkins, Simon.Flax
fiber
cell wall
lignin
Cellulose
ESTs
1600Floral development of an asexual and female-like mutant carrying two deletions in gynoecium-suppressing and stamen-promoting functional regions on the Y chromosome of the dioecious plant Silene latifolia
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Reproductive DevelopmentKoizumi, Ayako; Amanai, Yasuhito; Ishii, Kotaro; Nishihara, Kiyoshi; Kazama, Yusuke; Uchida, Wakana; Kawano, Shigeyuki.Floral development
Deletion mapping
asexual mutant
dioecy
2299FLP-mediated Conditional Loss of an Essential Gene to Facilitate Complementation Assays
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Large Scale Technologies and ResourcesGanesan, Savita; Ayre, Brian G..Recombinase
Complementation
Mutant analysis
Gene replacement
836Formation of the central cytoplasmic compartment in chlorenchyma cells in Bienertia sinuspersici, a species performing single-cell C4 photosynthesis
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Photosynthesis(Carbon)Park, Joonho; Knoblauch, Michael; Edwards, Gerald.Bienertia sinuspersici
Development of the central cytoplasmic compartment
cytoskeleton
417FRET analysis of trans-membrane flipping of FM 4-64 in living root hairs: Is FM 4-64 a robust marker for endocytosis?
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Protein Targeting and Vesicular TraffickingGriffing, Lawrence; Johnson, Carol.endocytosis
331Fruit sugar transport and sugar homeostasis: Identification, gene expression and localization analysis of citrus juice sac cell vacuolar sugar transporters and identification of the citrus fruit proteome
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MetabolismKatz, Ehud; Esumi, Tomoya; Fon, Mario; Nakano, Ryohei; Sadka, Avi; Phinney, Brett S.; Blumwald, Eduardo.Fruit
Citrus
proteomics
sugar transporter
352FtsH11 Proteases Play a Critical Role in High Temperature Stress Tolerance in Plant
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Temperature ResponsesChen, Junping; Xin, Zhanguo; Burke, John J.Thermotolerance
FtsH11 protease
Photosystem
heat stress
Basal thermotolerance
497Functional analyses of Arabidopsis fatty acid hydroxylases
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MetabolismDuan, Hui; Rupasinghe, Sanjeewa; Rodrigo, Iyoncy; Sandfort, Kara; Pan, Yinghong; Schuler, Mary A..P450
fatty acids
267Functional analyses of the putative flowering time gene OsMADS56
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Reproductive DevelopmentRyu, Choong-Hwan; Lee, Shinyoung; Jang, Sung-Hoon; An, Gynheung.OsMADS56
SOC1/AGL20
OsMADS50
1328Functional Analysis and Characterization of B Functional MADS Box Genes form Orchid (Oncidium Gower Ramsey)
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Reproductive DevelopmentYang, Chang-Hsien.MADs box genes
orchid
1570Functional Analysis and Characterization of GIGANTEA (GI) and CONSTANS (CO)-like Orthologues from Orchid (Oncidium Gower Ramsey)
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Growth and Vegetative DevelopmentChang, Yu-Yun; Kao, Chai-Wei; Yang, Chang-Hsien.flowering time
gigantea
constants
150Functional Analysis and Molecular Characterization of Polygalacturonase-Inhibiting Proteins (PGIPs) in Chinese Cabbage
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Plant-Pathogen InteractionsHwang, Byung-Ho; Kim, Shinje; Kim, Do-Sun; Lim, Myung-Ho; Park, Beom-Seok; Kim, Jongkee.PGIP
soft rot
Chinese cabbage
microarray
3D modeling
545Functional analysis of a peroxisomal acyl-CoA synthetase protein family from Arabidopsis thaliana uncovers enzymes participating in jasmonic acid biosynthesis
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LipidsKienow, Lucie; Schneider, Katja; Bartsch, Michael; Miersch, Otto; Wasternack, Claus; Kombrink, Erich.jasmonate signaling
peroxisomes
acyl-CoA synthetase
Arabidopsis thaliana
beta-oxidation
CoA ligase
jasmonic acid
1653Functional Analysis of Grapevine Transcription Factors VaERF4 and VaERF5
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Mechanisms of Gene RegulationChen, Q.; Fung, R. W. M.; Qiu, Wenping.Grapevine
ethylene response factor
844Functional analysis of heat shock protein 70 in flooding-stressed Nicotiana tabacum
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Water RelationsKo, Dae Kwan; cho, eun kyung; Hong, Choo Bong.heat shock protein
flooding
183Functional analysis of Hydrophlins LEA4 in Arabidopsis thaliana in drought adaptive response
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Water RelationsOlvera-Carillo, Yadira; Reyes, Jose Luis; Campos, Francisco; Covarrubias, Alejandra.LEA proteins
Water stress
Arabidopsis
Drought resistance
2296Functional Analysis of Plant and Cyanobacterial Members of the Folate-Biopterin Transporter Family
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Membrane TransportEudes, Aymerick; Kunji, Edmund; Noiriel, Alexandre; Klaus, Sebastian; Vickers, Tim; Beverley, Stephen; Gregory, Jesse; Hanson, Andrew.folate
transporters
cyanobacteria
786Functional Analysis of Plasma Membrane Protein 3 (PMP3) Homologs in Higher Plants
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SalinityMitsuya, Shiro; Hattori, Tasuku; Fujiwara, Takashi; Tetsuko, Takabe.PMP3
salinity
stress tolerance
land plants
431Functional Analysis of Seed-Expressed Metallothioneins in Arabidopsis
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Heavy Metals and PhytoremediationPunyasuk, Napassorn; Meetam, Metha; Goldsbrough, Peter.Arabidopsis thaliana
Metallothioneins
Functions
Seeds
1125Functional analysis of the acidic domain of RF2a, a rice b-ZIP protein
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Mechanisms of Gene RegulationOrdiz, M. Isabel; Barbazuk, Brad; Beachy, Roger N..gene regulation
activation domains
bZIP transcription factors
chimeric proteins
526Functional analysis of the Eukaryotic Elongation Factor One Alpha gene family
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Mechanisms of Gene RegulationTefft, Nicholas; Miles, Timothy; Ransom-Hodgkins, Wendy.eEF1A
T-DNA
qRT-PCR
92Functional analysis of the FRNK motif in the Turnip mosaic potyvirus helper component proteinase (HC-Pro)
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Plant-Pathogen InteractionsCarr, Tyrell; Torney, Valerie; Whitham, Steven.Turnip mosaic virus
Potyvirus
HC-Pro
Gene Silencing
Symptoms
1004Functional analysis of the membrane associated protein, APM1
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Environmental PhysiologyHosein, Fazeeda; Anindita, Bandyopadhyay; Peer, Wendy; Murphy, Angus.aminopeptidase
2587Functional analysis of the novel anther specific gene, AtPLIM2a, encoding LIM-domain proteins in Arabidopsis
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Reproductive DevelopmentPark, Jong-In; Endo, Makoto; Kazama, Tomohiko; Hakozaki, Hirokazu; Takada, Yoshinobu; Kawagishi-Kobayashi, Makiko; Watanabe, Masao.Anther
pollen
LIM domain
promoter
GUS
In situ hybridization
GFP
1838Functional analysis of the type III sucrose transporter LjSUT4 from Lotus japonicus
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Membrane TransportReinders, Anke; Sivitz, Alicia B.; Ward, John M..sucrose transport
symport
Lotus
Xenopus
Arabidopsis
251Functional and Informatic Analyses of the Arabidopsis Plastid
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Large Scale Technologies and ResourcesLu, Yan; Savage, Linda J.; Ajjawi, Imad; Imre, Kathleen M.; Reif, Jessica L.; Last, Robert L..Plastid
Functional genomics
Arabidopsis
Chloroplast
554Functional and interacting domains of AtPGP4 that confer directionality of auxin transport
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Hormone BiologyTitapiwatanakun, Boosaree; Bandhyopadhyay, Anindita; Blakeslee, Josh; Peer, Wendy; Murphy, Angus.
283Functional characterization of DAB4 in floral organ abscission and apical dominance
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Reproductive DevelopmentKim, Joonyup; Binder, Brad M.; Patterson, Sara E..Abscission
apical dominance
Hormone signaling
553Functional characterization of Lysine-rich AGPs by reverse genetics
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Cell WallsZhang, Yizhu; Yang, Jie; Showalter, Allan M..Arabidopsis
microarray
hyperglycosylated hydoxyproline-rich glycoproteins
GPI anchor
521Functional Characterization of Novel Rosaceae Genes in Transgenic Arabidopsis and Strawberry (Fragaria spp.)
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Evolution of Development and PhysiologyFolta, Kevin M.; Davis, Thomas; Steeves, Cody; Clancy, Maureen.Fragaria
Rosaceae
Functional genomics
novel regulators
gene function
1555Functional characterization of petunia petal senescence related proteins by virus-induced gene silencing
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Reproductive DevelopmentBai, Shuangyi; Willard, Belinda; Kinter, Michael; Francis, David; Jones, Michelle.senescence
proteomics
1679Functional characterization of plant-parasitic cyst nematode CLE peptides
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Plant-Pathogen InteractionsWang, Jianying; Replogle, Amy; Wang, Xiaohong; Davis, Eric; Mitchum, Melissa.cyst nematode
CLAVATA3
171Functional characterization of the AtSUC2 sucrose transporter from Arabidopsis thaliana in plant growth and development by tissue specific complementation assays
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Membrane TransportSrivastava, Avinash C.; Ayre, Brian G..sucrose
Arabidopsis thaliana
AtSUC2
Sucrose transporter
2060Functional characterization of The PAL gene family in Nicotiana tabacum
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Secondary MetabolismReichert, Angelika I; Dixon, R. A..phenylalanine ammonia lyase
tobacco
enzyme regulation
531Functional Characterization of the Putative PC-PLC Gene Family in Arabidopsis
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LipidsPeters, Carlotta; Wang, Xuemin; Shivakumar, Devaiah; Wood, Tara.
1626Functional characterization of the Sec14 domain of patellin1
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Protein Targeting and Vesicular TraffickingPeterman, Kaye; Oddone, Alessandra; Dankwa, Selasi.patellin1
Sec14
membrane traffic
439Functional characterization of the transcription factor AtMYBR1 – a repressor of ABA signaling
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Hormone BiologyJaradat, Masrur R.; Huang, Daiqing; Cutler, Adrian J..Hormone signaling
Abscisic Acid
microarray
abiotic stress
ABA analog
798Functional dissection of highly conserved amino acid substitutions in the recessive potyvirus resistance genes encoding eIF4E
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Plant-Pathogen InteractionsYeam, Inhwa; Cavatorta, Jason; Ripoll, Daniel; Kang, Byoung-Cheorl; Jahn, Molly.Solanaceae
Capsicum
translation initiation
cap-binding
Potyvirus
311Functional Divergence and Evolution of Expression in the Monosaccharide Transporters of Arabidopsis and Rice
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Genome EvolutionJohnson, Deborah Alongi; Hill, Jeffrey P.; Thomas, Michael A..comparative functional genomics
gene expression level
monosaccharide transporters
Arabidopsis thaliana
Oryza sativa
gene expression evolution
gene expression breadth
912Functional Genomic Analysis Supports Conservation of Function Among Cellulose Synthase-Like A Gene Family Members and Suggests Diverse Roles of Mannans in Plants
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Cell WallsLiepman, Aaron H.; Nairn, C. Joseph; Willats, William G T; Sorensen, Iben; Roberts, Alison; Keegstra, Kenneth.glycosyltransferase
cellulose synthase like gene
mannan
glucomannan
cell wall
1986Functional genomics of a cotton mutant that alters plant morphogenesis
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Growth and Vegetative DevelopmentMcMahon, K. Wyatt; Wilkins, Thea.leaf morphology
Cotton fiber
394Functional genomics of Arabidopsis responses to Verticillium dahliae Klebhan
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Plant-Pathogen InteractionsVeronese, Paola.vascular pathogen
Verticillium
defense mechanisms
microarrays
Arabidopsis
1507Functional Genomics of Flowering in Populus
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Reproductive DevelopmentWang, Chieh-Ting; Puzey, Josh; Etherington, Elizabeth; Page, Grier; Brunner, Amy.flowering
Populus
microarray
PtCENL1
Functional genomics
1359Functional identification and expression analyses of two T-DNA insertion mutants with activated expression of rice gibberellin 2-oxidase genes OsGA2ox5 and OsGA2ox6 respectively
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Hormone BiologyLo, Shuen-Fang; Yu, Su-May; Chen, Liang-Jwu.rice
Mutant Screening
gibberellin
Activation Tagging
275Functional Identification of a flavonol 7-O-rhamnosyltransferase gene from Arabidopsis: Comprehensive approach by transcriptome coexpression analysis, targeted metabolite analysis and reverse genetics
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MetabolismYonekura-Sakakibara, Keiko; Tohge, Takayuki; Niida, Rie; Saito, Kazuki.glycosyltransferase
flavonoid
coexpression analysis
transcriptome
Arabidopsis thaliana
1557Functional investigation of two Arabidopsis sorting nexins
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Protein Targeting and Vesicular TraffickingPhan, Nguyen; Bassham, Diane.Arabidopsis thaliana
sorting nexin
endosome
trafficking
FM4-64
478Functional role of the ATP-binding domain in Arabidopsis cold shock domain proteins
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Temperature ResponsesNakaminami, Kentaro; Karlson, Dale, T.cold shock domain
ATP binding
cold acclimation
Arabidopsis
271Functional Study of Aldehyde Dehydrogenase 7 (OsALDH7) in Rice (Oryza sativa L)
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Oxidative StressShin, Jun-Hye; Kim, Sung-Ryul; An, Gynheung.ALDH
oxidative stress
359Function of Arabidopsis class E proteins in the endosomal sorting pathway
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Organelle BiologySliwinski, Marek K.; Haas, Thomas; Otegui, Marisa.endosome
SKD1
Arabidopsis
487Function of Coactivator Proteins ADA2 and GCN5 in Cold Acclimation in Arabidopsis
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Temperature ResponsesPavangadkar, Kanchan; Thomashow, Michael; Triezenberg, Steven.cold acclimation
histone acetylation
GCN5
ADA2
CBF
1462Functions of the STAS domain in the Arabidopsis sulfate transporter, Sultr1;2
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Mineral NutritionShibagaki, Nakako; Grossman, Arthur.sulfate transporter
STAS domain
OASTL
1355Fusarium graminearum resistance in corn (Zea mays L.)
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Plant-Pathogen InteractionsReinprecht, Yarmilla; Wu, Xiaoguang; Luk-Labey, Shun-Yan; Martin, Christopher J.; Pauls, K. Peter.Corn
Fusarium graminearum
QTL
resistance genes
gene-based markers
395GA and Sugar Signaling Interference in Germinating Cereal Grains: Mechanism of MYBGA and MYBS1 Interaction in the Regulation of α-Amylase Gene Expression
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Mechanisms of Gene RegulationYu, Su-May; Hong, Ya-Fang.Hormone signaling
rice
sugar signaling
alpha-amylase
seed germination
892GASA4, a GA-stimulated gene, participates in light signaling in Arabidopsis
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PhotomorphogenesisChen, Ing-Chien; Hsieh, Hsu-Liang.gibberellin
GASA4
FIN219
Light signaling
flowering
212Gene Expression and Metabolite Profiling of Arabidopsis at Elevated and Super-elevated CO2 Reveal a Diminished Ability of Plants to Adjust to Super-elevated CO2 Levels
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Environmental PhysiologyKaplan, Fatma; Zhao, Wei; Popp, Michael; Richards, Jeffrey; Wheeler, Raymond M.; Guy, Charles L.; Levine, Lanfang H..Arabidopsis
Elevated CO2
Super-elevated CO2
gene expression
Metabolite profile
Transpiration
Water Use Efficiency
2142Gene expression and QTL analysis of environmentally-induced dormancy in lettuce seeds and the release of dormancy by NO
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Seed BiologyYou, Young-Sook; Plummer, Stacey; Leonard, Terry; Hayashi, Eiji; Still, David W..Seed dormancy
phytohormone
QTL
gene expression
130Gene expression profiles of photoperiodic responsive genes and their role in determination of meristem identity in Proteaceae
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Reproductive DevelopmentSmart, M; Roden, Laura C.; Cramer, MD.Protea
flowering
LEAFY
photoperiod
867Gene flow risk assessment in centres of crop origin and diversity
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Plant biotech & Risk AssessmentAndersson, Meike S; Alvarez Sánchez, Diego F; Jarvis, Andy; Hyman, Glenn; de Vicente, M Carmen.gene flow
biosafety
Crop-to-Wild Gene Flow
crop wild relatives
centre of origin
hybridization
risk assessment
1898Genes required for rhizobial invasion and root nodule development in Medicago truncatula
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Plant-Symbiont InteractionsPislariu, Catalina I; Morris, Viktoriya; Lee, Yi-Ching; Wessler, Heath G; McKethan, Brandon; Veereshlingam, Harita; Gann, Janine G; Sherrier, Janine; Dickstein, Rebecca.nitrogen fixation
Legume nodulation
Medicago truncatula
nodulation mutants
nip and sli
335Gene Targeting in Plants via Engineered Zinc Finger Proteins
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Emerging TechnologiesCai, Charles; Baker, Lisa; Urnov, Fyodor; Miller, Jeffrey; Worden, Andrew; Blue, Ryan; Bauer, Teresa; Gregory, Philip; Petolino, Joseph.Gene targeting
homologous recombination
zinc finger nucleases
plant cell
1826Genetic, Biochemical and Physiological Studies Acetyl-CoA Metabolism via Condensation
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MetabolismJin, Huanan; Nikolau, Basil J.Acetoacety-CoA Thiolase
PHB
306Genetic analysis of defense related genes in Arabidopsis infected with turnip crinkle virus
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Plant-Pathogen InteractionsDonze, Teresa; Basnayake, Veronica; Jensen, Ty; Davis, Amber; Qu, Feng; Twigg, Paul; Morris, T. Jack.plant-virus interaction
Turnip crinke virus
Arabidopsis thaliana
defense
900Genetic Analysis of TCE Metabolism in Arabidopsis and Poplar
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Heavy Metals and Phytoremediationdoty, sharon; Kang, JunWon; Lee, KeumYoung; Wilkerson, Jasmine; Beyer, Dick; Bammler, Theo; Farin, Fred; Bilgin, Metin; Schuler, Mary A.; Strand, Stuart.Phytoremediation
392Genetic Analysis of the SUMO Conjugation Machinery in Arabidopsis
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Protein Modification and TurnoverMiller, Marcus; Saracco, Scott; Vierstra, Richard.SUMO
ubiquitination
Post Translational Modification
1912Genetic and Biochemical Analysis of Wax Synthase genes of Arabidopsis
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LipidsJin, Yuqin; Daolin, Chen; Ling, Li.wax synthase ester lipid
wax synthase
esters
2172Genetic And Functional Genomic Analyses Of Early Events In Cotton Fiber Development
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Growth and Vegetative DevelopmentWoodward, Andrew W.; Lee, Jinsuk J.; Han, Zhiguo; Yang, S. Samuel; Chen, Z. Jeffrey.
2196Genetic and Non-Genetic Factors that Influence Apical Hook Opening in Blue Light
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PhotomorphogenesisDurham, Tessa L.; Miller, Nathan D.; Spalding, Edgar.apical hook
hook opening
blue light
seed size
glutamate receptor
GLR
529
Canceled
Genetic Control of the Carbon-Nitrogen Balance in Maize Leaves
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Mineral NutritionChurch, Jeffrey; Seebauer, Juliann; Schneerman, Martha; Below, Frederick; Moose, Stephen.nitrogen and carbon metabolism
C4 photosynthesis
1871Genetic dissection of temperature modulation of defense responses in Arabidopsis thaliana
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Temperature ResponsesWang, Yi; Zhu, Ying; Hua, Jian.temperature
pathogen defense
genetic screen
807Genetic Diversity Studies of Bouteloua eriopoda (Black grama grass) in Southern New Mexico: Spacial and Temporal Variations
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Genome EvolutionPotenza, Carol; Slaughter, Amalia L.; Yeater, Kathleen M.; Barrow, Jerry R..C4 grass
AFLP
Genetic diversity
native plant
semi-arid environment
824Genetic evidence for differences in the pathways of druse and prismatic calcium oxalate crystal formation in Medicago truncatula
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MetabolismNakata, Paul; McConn, Michele.Calcium
oxalate
Medicago truncatula
76Genetic mapping and characterization of Arabidopsis mutants deregulated in GSTF8 expression
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Oxidative StressVeerappan, Vijaykumar; Wang, Jing; Shi, Huazhong; Allen, Randy D..oxidative stress
GSTF8
gce
ghes
mapping
defense
1749Genetic of Inflorescence Replacement in Arabidopsis
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Reproductive DevelopmentSano, Cecile; Hubler, Merla; Bohn, Martin; Jacobs, Thomas.apical dominance
Natural variation
Inflorescence development
meristem
quantitative genetics
association mapping
16Genetic variability and heritability estimates for seedling traits in wheat (Triticum aestivum L.) genotypes under salt stress
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SalinityMurtaza, Naveed; Malik, Waqas; Qayyum, Abdul.
876Genome-wide analysis of transcription factor gene expression by high-throughput qRT-PCR in Medicago
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Large Scale Technologies and ResourcesKakar, Klementina; Wandrey, Maren; Cheung, Foo; Xiao, Yongli; Wu, Hank; Town, Christopher; Schlereth, Armin; Czechowski, Tomasz; Stitt, Mark; Verdier, Jerome; Thompson, Richard; Torres-Jerez, Ivone; Udvardi, Michael K..transcript profiling
transcription factor
real-time RT-PCR
seed development
Medicago
Arabidopsis
349Genome-wide expression analysis of developing wild-type and mutant Arabidopsis anthers: establishing a regulatory network for anther development
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Reproductive DevelopmentWijeratne, Asela; Sun, Yujin; Zhang, Wei; Liu, Wenlei; Ma, Hong.Anther
Differential expression
male sterile mutant
network
166Genome-wide expression analysis of Sucrose Synthase Genes in the Poplar Trees
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Cell WallsXu, Fuyu; Joshi, Chandrashekhar P..Populus
Sucrose synthase genes
Genome-wide
Differential expression
Mechanical stress
Time course
2704Genome-Wide Expression Profiling of the Arabidopsis Female Gametophyte Identifies Families of Small, Secreted Proteins
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Reproductive DevelopmentJones-Rhoades, Matthew; Borevitz, Justin; Preuss, Daphne.Embryo sac
gene expression
Tiling arrays
DUF784
2013Genome-wide profiling and analysis of the Vitis transcriptome responses to Xylella fastidiosa infection.
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Plant-Pathogen InteractionsDoddapaneni, Harshavardhan; Lin, Hong; Takahashi, Yuri; Walker, M. Andrew.transcriptome
Vitis
Pierce's disease
342Genome-wide transcriptional response of grapes to Pierce's disease and water deficit
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Plant-Pathogen InteractionsChoi, Hong-Kyu; Iandolino, Alberto; Goes da Silva, Francisco; Cook, Douglas R..Grapevine
Pierce's disease
Xylella fastidiosa
1217
Canceled
Genomic approaches highlight the role played by sugars, auxins and polyamines during organogenic nodule formation in hop
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Integrative Plant PhysiologyFortes, Ana M; Santos, Filipa; Figueiredo, Andreia; Choi, Young; Silva, Marta; Sousa, Lisete; Pessoa, Fernando; Sebastiana, Mónica; Acioli, Bartolomeu; Palme, Klaus; Malhó, Rui; Pais, Maria Salomé.transcriptional profiling
metabolomic profiling
morphogenesis
2096Genomic Approaches to Study the Evolution of Seeds
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Evolution of Development and PhysiologyBrenner, Eric; Stevenson, Dennis Wm.; Little, Damon; de le Torre, Eduardo; Katari, Manpreet; Lee, Ernest; Egan, Mary; DeSalle, Rob; McCombie, W. Richard; Martienssen, Rob; Coruzzi, Gloria.Seed
gymnosperm
evolution
Cycad
ginkgo
selaginella
338Genomics and RNAi Functional Analysis of a Highly Expressed Nod Gene Family in Phaseolus vulgaris
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Plant-Symbiont InteractionsOlivares, JE; Estrada, G; Campos, Francisco; Guillén, G; Alvarado, X; Díaz, C; Santana, O; Sanchez, F.Bean nodulin function
secretory pathway
default death pathway
Functional genomics
transgenic bean nodules
454Genomics and RNAi Functional Analysis of a Highly Expressed Nod Gene Family in Phaseolus vulgaris
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Plant-Symbiont InteractionsOlivares, JE; Campos, Francisco; Estrada, G; Guillén, G; Alvarado-Affantranger, X; Díaz, C; Santana, O; Sanchez, F.transgenic bean nodules
secretory pathway
Bean nodulin function
default death pathway
Functional genomics
446Gibberellin Biosynthesis and Function in Bryophytes
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Evolution of Development and PhysiologyAnterola, Aldwin; Shanle, Erin; Mansouri, Katayoun; Schuette, Scott; Vidal-Russell, Romina; Coates, Robert; Von Schwartzenberg, Klaus; Renzaglia, Karen.bryophytes
gibberellins
phytohormone
evolution
diterpenoid
spore germination
mosses
antheridiogen
837Global expression profiling as a tool to develop molecular markers linked to herbicide stress in Arabidopsis
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Plant biotech & Risk AssessmentDas, Malay; Schäffner, Anton R.; Mader, Michael T.; Reichman, Jay R.; Watrud, Lidia S.; Pfleeger, Thomas G.; Olszyk, David M..chemical herbicide
drift
gene expression
microarray
molecular marker
407Global Functional Analyses of Rice Promoters by Genomics approaches
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Large Scale Technologies and ResourcesYu, Su-May; Ko, Swee-Suak; Hong, Chwan-Yang; Sun, Hsou-Jan; Ho, Tuan-hua David.Promoters
Functional genomics
bioinformatics
rice
Promoter trap
Biotechnology
239Global impact of genetic manipulation of polyamines
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Metabolic EngineeringPage, Andrew; Minocha, Rakesh; Minocha, Subhash.microarrays
polyamines
gene expression
2687Glowing Results: A Laboratory Exercise for Demonstrating Plant Transformation
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Education & OutreachMetzler, Melissa M; Theis, Whitney S; Miles, Thomas T; Robinson, Dave L; Lau, Joann M.Arabidopsis
Luciferase
Agrobacterium tumefaciens
Plant transformation
Laboratory exercise
bioluminescence
1088Glucurono(Arabino)Xylan biosynthesis in wheat
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Cell WallsZeng, Wei; Chatterjee, Mohor; Faik, Ahmed.cell wall
cereal
glucoronoarabinoxylan
biosynthesis
2580Glutathione and cysteine biosynthesis in two varieties of Abelmoschus esculentus in response to mine spoil
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Oxidative StressArya, Shashi; Roy, Bijoy Krishna.glutathione
cysteine
Mine spoil
Abelmoschus esculentus
1552Glycerol-3-phosphate permease, a putative organic phosphate transporter and its potential role during phosphate stress in plants
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Mineral NutritionRamaiah, Madhuvanthi; Karthikeyan, Athikkattuvalasu S; Raghothama, Kashchandra G.Glycerol-3-phosphate permease
metabolic
Phosphate transporter
phospholipid
1112Glycoarray, a Novel Technology for Screening of Plant Cell Wall Glycosyltransferase Activities
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Cell WallsShipp, Matthew; Nadella, Ramya; Faik, Ahmed.glycochip
glycosyltransferase
cell wall
2190Gramene: A Resource for Comparative Plant Genomics
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Large Scale Technologies and ResourcesJaiswal, Pankaj; Avraham, Shuly; Buckler, Edward; Casstevens, Terry; Hebbard, Claire; Liang, Chengzhi; Ni, Junjian; Ravenscroft, Dean; Ren, Liya; Stein, Lincoln; Spooner, William; Tecle, Isaak; Thomason, Jim; Xuehong, Wei; Ware, Doreen; Youens-Clark, Ken; Yap, Immanuel; McCouch, Susan.Genome-wide
synteny
Genetic Resource
Genetic markers
Genetic diversity
Genetic variation
genomics
metabolic pathway
genetic maps
rice
Arabidopsis
maize
Comparative Genomics
comparative functional genomics
800Gravity persistent signal 1 reveals two novel cytochrome P450s involved in plant gravitropism
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TropismsWithers, John C.; Wyatt, Sarah.Signal transduction
gravitropism
cytochrome P450
49Green fluorescent protein as a vital marker for detection of transformation events in transgenic soybean produced by Agrobacterium mediated transformation.
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Plant biotech & Risk AssessmentHanafy, Moemen; Rahman, Mizanur; Fujiwara, Toru; Ishimoto, Masao.Plant transformation
Soybean
Methionine
520Green Light Antagonizes Phytochrome and Cryptochrome Responses in Developing Seedlings
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PhotomorphogenesisMaruhnich, Stefanie; Kumar, Dibyendu; Dhingra, Amit; Folta, Kevin M..green light
photomorphogenesis
Phytochrome
cryptochrome
seedling development
1214Growth-phase-dependent gene expression of poplar cells
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Growth and Vegetative DevelopmentLee, Hyoshin; Lee, Jae-Soon; Bae, Eun-kyung; Park, So-Young; Sjodin, Andreas; Noh, Eun-Woon; Jansson, Stefan.DNA microarray
cell growth
gene expression
Populus
suspension culture
2152Growth and development under elevated CO2 for Arabidopsis thaliana having altered expression of mitochondrial pyruvate dehydrogenase kinase
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Environmental PhysiologyWeraduwage, Sarathi; Micallef, Malgre C.; Grodzinski, Bernard; Micallef, Barry J..Effect of elevated CO2 on plant metabolism
C metabolism and circadian sink activity
Mitochondrial pyruvate dehydrogenase complex
Pyruvate dehydrogenase kinase
Antisense respression of mtPDHK
Arabidopsis thaliana with altered respiratory capacities
71Growth control in plants by chromatin modifying complexes
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Growth and Vegetative DevelopmentHimanen, K; Nelissen, H; Fleury, D; Cnops, G; Boccardi, T; Inze, D; Van Lijsebettens, M.growth
leaf
chromatin modification
Arabidopsis
Elongator
histone monoubiquitination
2586GUN1 (GENOMES UNCOUPLED1) encodes a pentatricopeptide repeat (PPR) protein involved in plastid protein synthesis-responsive retrograde signaling to the nucleus
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Intracellular SignalingCottage, Amanda; Mott, Ellie; Wang, Jun-Hui; Sullivan, James; MacLean, Dan; Tran, Linh; Choy, Mun-Kit; Newell, Christine; Kavanagh, Tony; Aspinall, Sue; Gray, John C..retrograde regulation
1815HAESA and HAESA-like 2 activate floral organ abscission in an ethylene-independent manner
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Reproductive DevelopmentCho, Sung Ki; Chevalier, David; Lease, Kevin; Jinn, Tsung-Luo; Walker, John.Arabidopsis floral organ abscission
1674Hands-on undergraduate internship, bridges to channel Hispanic students to science
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Education & OutreachLouzada, Eliezer; Persans, Michael W; del Rio, Sonia.Undergraduate research
hands-on internship
Hispanic education
1796HC-Pro suppression of RNA silencing requires the putative transcription factor RAV2
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Plant-Pathogen Interactionsendres, matthew; xin, ge; bowman, lewis; vance, vicki.
2123Heat tolerance and the expression of chloroplast protein synthesis elongation factor, EF-Tu, in spring wheat
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Temperature ResponsesBukovnik, Urska; Momcilovic, Ivana; Fu, Jianming; Prasad, P.V. Vara; Ristic, Zoran.heat stress
EF-Tu
spring wheat
570Heavy metal and coliforms contamination in green leafy vegetables
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Heavy Metals and PhytoremediationAggarwal, Honey; Jaj, Navneet; Goyal, Dinesh.heavy metal
green leafy vegetables
169Heavy Metal Phytoremediation & Arbuscular Mycorrhiza: A New Paradigm in Model Building
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Heavy Metals and PhytoremediationAudet, Patrick; Charest, Christiane.heavy metal bioavailability
heavy metal phytotoxicity
mycorrhizal feedback
254HEMERA: a novel regulator required for phytochrome nuclear body localization and photomorphogenesis in Arabidopsis
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PhotomorphogenesisChen, Meng; Chory, Joanne.Phytochrome
photomorphogenesis
chloroplast development
1330Heterologous Expression and Biochemical and Cellular Characterization of CaPLA1 Encoding a Hot Pepper Phospholipase A1 homolog
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LipidsKim, Eun Yu; Seo, Young Sam; Mang, Hyung Gon; Son, ORa; Kim, Woo Taek.phospholipase A1
root growth
cell cycle
lipid metabolism
Hot pepper
Arabidopsis
1546Highly-conserved small-subunit residues affect Rubisco function
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Photosynthesis(Carbon)Genkov, Todor; Spreitzer, Robert J..rubisco
Chlamydomonas
Photosynthesis
544Histone methylation in flowering time regulation
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EpigeneticsXu, Lin; Zhao, Zhong; Meyer, Denise; Shen, Wen-Hui.histone methylation
SET domain
transcriptional regulation
chromatin-remodeling
flowering
21History, Genomes and Importance of Saffron in The World and Iran
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Genome EvolutionSharrif moghaddasi, mohammad; Sharrif, Chiler.Crocus
Species
Genomes
Cultivation
Export
1255Hormone interactions and regulation of PsPK2:GUS compared to DR5:GUS in Arabidopsis thaliana
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Growth and Vegetative DevelopmentBai, Fang; DeMason, Darleen.PsPK2:GUS
DR5:GUS
auxin
GA
Cytokinin
Hormone
pea
Arabidopsis thaliana
405Hormonome Analysis at RIKEN Plant Science Center
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Hormone BiologyJikumaru, Yusuke; Hanada, Atsushi; Sekimoto, Masayo; Nambara, Eiji; Yamaguchi, Shinjiro; Kamiya, Yuji.Hormone
Analysis
LC-MS/MS
gibberellin
841Host-Pathogen Interaction in Sesamum indicum
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Plant-Pathogen InteractionsSharma, Anubhuti; Sharma, Vinay.Sesamum indicum
HPLC
Polyphenol content
Co-chromatography
75How literature can help science: a practical approach to bridging “The two cultures”
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Education & OutreachDe Tullio, Mario C..literature
science communication
Primo Levi
Italo Calvino
science teaching
2075How many chloroplast EF-Tu genes exist in maize and wheat?
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Temperature ResponsesFu, Jianming; Momcilovic, Ivana; Ristic, Zoran.heat stress
Chloroplast EF-Tu
2537How plants cope with organic xenobiotics: Metabolism and transport of xenobiotic conjugates in the rhizosphere
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Environmental PhysiologySchroeder, Peter; Scheer, Christian; Diekmann, Frauke; Stampfl, Andreas.organic xenobiotic
glutathione S-transferases
Hordeum vulgare
peptide transport
1070Hybrid Rubisco enzymes expressed in Chlamydomonas reinhardtii
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Photosynthesis(Carbon)Genkov, Todor; Spreitzer, Robert J..rubisco
Chlamydomonas
Photosynthesis
CO2 fixation
894Hydraulic conductance responses of bur oak (Quercus macrocarpa) leaves to light and inhibitor treatments
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Water RelationsVoicu, Mihaela; Zwiazek, Dr. Janusz; Tyree, Mel.aquaporins
Atrazine
leaf lamina hydraulic conductance
irradiance
HgCl2
sodium fluoride
mercaptoethanol
1436Hydrogen peroxide accumulation and oxalate oxidase activity correlate with quantitative disease resistance in rice
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Plant-Pathogen InteractionsSnelling, Jacob; Davidson, Rebecca; Leach, Jan E..Oxalate Oxidase
Quantitative trait loci (QTL)
enzyme assays
Magnaporthe grisea
419Hydrogen Peroxide Modulates Abscisic Acid Signaling in Root Growth and Development in Arabidopsis
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Hormone BiologyBai, Ling; Zhou, Yun; Zhang, Xiaoran; Cao, Mingqing; Song, Chun-Peng.Arabidopsis
root growth
ABA
H2O2
1957Hydrogen peroxide treatment induces cold tolerance in Arabidopsis via calcium-dependent signaling
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Temperature ResponsesYu, Chih-Wen; Hung, Shu-Hsien; Yeh, I-Fang; Lin, Chin-Ho.Arabidopsis
Calcium
Cold
Hydrogen peroxide
2307HYPER-PHOTOTROPIC HYPOCOTYL mutants exhibit unusual effects on phototropin mediated processes in Arabidopsis
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TropismsCelaya, Brandon; Campell, Thomas; Luesse, Darron; Galen, Candace; Hangarter, Roger; Liscum, Mannie.phototropism
phototropin
Signaling
129IbMYB1, a regulator of anthocyanin biosynthesis in tuberous root of purple-fleshed sweet potato
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Mechanisms of Gene RegulationMano, Hironori; Sato, Kazuhito; Higo, Hiromi; Minobe, Yuzo.transcription factor
MYB
anthocyanin
sweet potato
225IBR5, a putative dual-specificity protein phosphatase, affects auxin response independently of TIR1
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Hormone BiologyStrader, Lucia; Monroe-Augustus, Melanie; Bartel, Bonnie.auxin
Signaling
phosphatase
1094Identification and characterization of a glucuronosyltransferase activity involved in glucurono(arabino)xylan biosynthesis in Wheat
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Cell WallsChatterjee, Mohor; Zeng, Wei; Faik, Ahmed.glucuronosyltransferase
glucurono(arabino)xylan
Cereals
glycosyltransferase
cell wall
2092Identification and characterization of amino acid transporters in legume seeds
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Membrane TransportTan, Qiumin; Grennan, Aleel; Rentsch, Doris; Tegeder, Mechthild.amino acid transport
legume
Seed
379Identification and characterization of a novel type of Vacuolar Na+/H+ eXchanger from S.cerevisiae : a new yeast mutant for plant gene heterologous expression
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Membrane TransportCagnac, Olivier; Leterrier, Marina; Leon, Sebastien; Yeager, Mark; Blumwald, Eduardo.yeast
cation/H+ antiporter
vacuole
193Identification and characterization of Cor413im proteins as novel inner envelope membrane proteins of chloroplasts implicated in cold acclimation
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Temperature ResponsesOkawa, Kumiko; Nakayama, Katsuhiro; Kakizaki, Tomohiro; Yamashita, Tetsuro; Inaba, Takehito.chloroplast envelope
Cor413im
freezing tolerance
membrane protein
149Identification and characterization of genes involved in Zn homeostasis
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Mineral NutritionTehseen, Muhammad; Sherson, Sarah; Cobbett, Christopher Stewart.Zinc
AtHMA2 & AtHMA4
Activation Tagging
423Identification and characterization of hydroxycinnamoyl transferases involved in o-diphenol biosynthesis in red clover
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Secondary MetabolismSullivan, Michael L..red clover
o-diphenol
phenylpropanoids
phasalic acid
clovamide
forages
525Identification and characterization of LEAFY COTYLEDON 1 in basal land plant taxa.
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Evolution of Development and PhysiologyKirkbride, Ryan C.; Harada, John J..seed development
1349Identification and characterization of novel Arabidopsis hemicellulose mutants
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Cell WallsPauly, Markus; Neumetzler, Lutz; Kraemer, Florian; Obel, Nicolai.cell wall
polysaccharide
hemicellulose
xyloglucan
Arabidopsis thaliana
mass spectrometry
glycosylhydrolase
2253Identification and Characterization of Selected Maize Cell Wall Mutants Generated in the UniformMu Population
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Cell WallsOBrien, Brent; Koch, K.E.; McCarty, Donald; Carpita, Nicholas C; Settles, Mark; Vermerris, WE; Avigne, W.T.; Hannah, Curt; McCann, Maureen.cell wall
maize
1452Identification and characterization of the Arabidopsis mutant scd2 (Susceptible to Coronatine-Deficient Pseudomonas syringae pv. tomato strain DC3118)
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Plant-Pathogen InteractionsZeng, Weiqing; Li, Yonghua; He, Sheng-Yang.
1616Identification and Functional Characterization of Genes Regulating Abscisic Acid Biosynthesis in Abiotic Stress Signal Transduction in Arabidopsis
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Oxidative StressWoo, Dong-Hyouk; Park, Hee-Yeon; Lee, Nam-Hoon; Lee, Chin Bum; Moon, Byoung Yong; Moon, Yong-Hwan.
1720Identification if Genes Associated with Aflatoxin Resistance and Generation of Gene Specific Markers in Maize
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Plant-Pathogen InteractionsWilkinson, J.R.; Mylroie, J.E.; Kelley, R.Y.; Brooks, T.D.; Williams, W.P..aflatoxin
gene-based markers
Aspergillus flavus
Zea mays
microarray
1910Identification of abiotic stress specific molecular switches for stress tolerance and enhanced seed composition in soybean through high throughput quantitative real time PCR
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Mechanisms of Gene RegulationValliyodan, Babu; Libault, Marc; Joshi, Trupti; Xu, Dong; Stacey, Gary; Nguyen, Henry.gene regulation
transcription factor
abiotic stress
Drought
Soybean
seed development
1924Identification of a functionally essential amino acid for the cyclic nucleotide gated ion channel ATCNGC11/12
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Plant-Pathogen InteractionsBaxter, Joyce; Moeder, Wolfgang; Wang, Maggie; Urquhart, William; Christendat, Dinesh; Yoshioka, Keiko.ion channel
disease resistance
CNGC
578Identification of Alternaria as a previously undescribed fungal endophyte of Cephalanthus occidentalis
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Plant-Symbiont InteractionsTeleha, Mary; Miller, Adam.Endophyte
Buttonbush
Alternaria
Cephalanthus occidentalis
symbiont
ITS sequence
1849Identification of an MDR1-dependent auxin transport stream required for normal cotyledon development in Arabidopsis
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Growth and Vegetative DevelopmentLewis, Daniel; Spalding, Edgar.Cotyledon expansion
Auxin transport
MDR1 = PGP19
261Identification of a Protein Kinase and a RING-Finger Protein Involved in Plant Metabolic Response
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MetabolismHuang, Yadong; Li, Chunyao; Gibson, Susan.sugar insensitive
Post-germination development
60Identification of a suppressor-mutant substitution in Synechococcus RubisCO that improves the stability of the wild-type enzyme and identifies a hydrophobic pocket close to active site
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Photosynthesis(Carbon)Satagopan, Sriram; Scott, Stephanie; Tabita, F. Robert.rubisco
Photosynthesis
Synechococcus
Bioselection
Calvin cycle
437Identification of Downstream Targets of EDR1, a Negative Regulator of Cell Death
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Hormone BiologyChristiansen, Katy; Innes, Roger.ABA
kinase
disease
EDR1
AtMYC2
909Identification of EDTA-soluble polysaccharides form pea epicotyls cell walls and their interaction with xyloglucan
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Cell WallsRizk, Sandra; Baydoun, Elias.Pectin
assemblins
cell wall
2292Identification of Endogenous Peptides that Cause Rapid Cytoplasmic Calcium Increases in Arabidopsis Seedlings
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Intracellular SignalingHaruta, Miyoshi; Sussman, Michael R..Calcium
peptide hormone
aequorin
RALF
2017Identification of genes encoding signaling components of MRR
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Mechanisms of Gene RegulationFoster, Carol M.; Zarkovic, Jelena; Umbach, Ann L.; Bollinger, Jeaninne M.; Ulker, Bekir; Somssich, Imre; Dale, Sachie; Rhoads, David M..mitochondria
retrograde regulation
WRKY
AOX1a
TCA cycle
respiration
486Identification of genes involved in apple fruitlets shedding: application to Arabidopsis
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Growth and Vegetative DevelopmentDe Franceschi, Filippo; Dal Cin, Valeriano; Barbaro, Enrico; Velasco, Riccardo; Ramina, Angelo; Patterson, Sara E..Abscission
Benzylaminopurine
ethylene
Malus domestica
776Identification of Genetic Loci Important for the Gene Regulation of AtERF3
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SalinityGuerrero, Noemi; Shi, Huazhong.ERF3P
ERFs
salinity
Drought
CCD imaging system
1630Identification of heat tolerance genes from Burmuda grass varieties using cDNA differential display and cyanine-labeled fluorescence Dot Blot
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Temperature ResponsesNveainiah Yoho, Peter; Zhou, Suping; Bhatti, Sarabjit.heat stress
871Identification of High Light Control Regions in the ELIP1 Gene Promoter in Arabidopsis
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Photosynthesis(Light)McClair, Janelle; Zareh, Meena; Rus, Ana; Bezmalinovic, Gorjana; Brusslan, Judy.ELIP
light
Arabidopsis
878Identification of Interacting Partners for the SNARE GPS2
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TropismsLuesse, Darron; Justus, Betsy; Wyatt, Sarah.gravitropism
Gravity
GPS
SNARE
Signal transduction
1386Identification of JIN1-Dependent Genes in Arabidopsis thaliana Using a Reverse Genetics Approach
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Plant-Pathogen InteractionsDemianski, Agnes J; Billi, Allison C; Kunkel, Barbara N.coronatine
JIN1
AtMYC2
191Identification of key enzymes for the regulation of amino acid metabolism
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MetabolismIgarashi, Daisuke; Ishizaki, Takashi; Dokiya, Yuko; Totsuka, Kazuhiko; Ohsumi, Chieko.nitrogen and carbon metabolism
photorespiration
amino acid
1067Identification of Microsatellite Markers for Diagnostic Genotyping Populus fremontii X Angustifolia Backcross Hybrids
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Genome EvolutionGomez, Idaliza; Tsai, Chung-Jui.Simple Sequence Repeats (SSRs)
Microsatellites DNA
Genotyping
1890Identification of PIMT target proteins in Arabidopsis seeds
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Seed BiologyChen, Tingsu; Majee, Susmita Maitra; Martin, David; Clarke, S.; Downie, Bruce.protein repair
184Identification of primary sequences sufficient for crosslinking proline-rich proteins within the root hair cell wall of Arabidopsis thaliana.
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Cell WallsXiao, Wei; Tierney, Mary.PRP
crosslinking
872Identification of QTL which will regulate the proportions of saturated and unsaturated fatty acids in seed oils of Arabidopsis thaliana.
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Mechanisms of Gene RegulationSanyal, Anushree.QTL
430Identification of Regulatory Components that Mediate Copper-Induced Expression of a Metallothionein Gene in Arabidopsis
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Heavy Metals and PhytoremediationMeetam, Metha; Goldsbrough, Peter.Metallothionein
heavy metal
Copper
gene regulation
oxidative stress
Arabidopsis
Hydrogen peroxide
1625Identification of salt affected genes in tomato seedlings using a cDNA microarray profiling
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SalinityZhou, Suping.salt
abiotic stress
2087Identification of Seed Borne Endopohytes that Confer Salt Tolerance to Host Plants
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Plant-Symbiont InteractionsLucero, Mary.Symbiosis
Aspergillus ustus
Bacillus sp.
endophyte transfer
1908Identification of transcriptional activators of CBF2 in response to low temperature
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Temperature ResponsesDoherty, C.J.; Van Buskirk, H.; Myers, S.J.; Thomashow, Michael.cold acclimation
freezing tolerance
CBF
507Identification of two novel arabidopsis mutants with hypersensitivity to jasmonic acid and the Pseudomonas syringae phytotoxin coronatine
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Plant-Pathogen InteractionsLaurie-Berry, Neva; Kunkel, Barbara N.coronatine
jasmonate signaling
380Identification of zip codes that target rice glutelin RNA to the cisternal ER
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Protein Targeting and Vesicular TraffickingWashida, Haruhiko; Sugino, Aya; Kaneko, Sachiyo; Okita, Thomas W.RNA targeting
Endoplasmic reticulum
zip codes
rice
glutelin
protein body
1839Identifying components in transcriptional response to temperature variation
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Temperature ResponsesZhu, Ying; Wang, Yi; Yang, Huijun; Hua, Jian.temperature response
cis-element
genetic screen
1531Identifying natural modifiers of a copine mutant bon1bon3
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Plant-Pathogen InteractionsLi, Yongqing; Hua, Jian.copine
BON
resistance genes
cell death
1098Identifying the pistil gene network that regulates final stages of pollen tube guidance
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Reproductive DevelopmentQin, Yuan; Palanivelu, Ravishankar.pollen tube guidance
Arabidopsis
arp6
93Images of plant cell biology on DVD: information for students and a resource for teachers
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Education & OutreachGunning, B.plant cell biology
live cell movies
ultrastructure
atlas of micrographs
252Immediate and transgenerational changes in plant genome stability triggered by salt stress
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SalinityBoyko, Oleksandr; Kovalchuk, Igor.salt stress
Transgenerational effects
methylation
homologous recombination
genome stability
262Immunological Detection of Maize Acetylcholinesterase after Heat Stress
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Temperature ResponsesMomonoki, Yoshie S.; Yamamoto, Kosuke; Oguri, Suguru; Okubo, Minoru.Acetylcholinesterase
heat stress
Immunolocalization
862Impact of a Fatty Acid Desaturase, Spr2, on Plant Defenses Against Aphids
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Plant-Pest InteractionsArevalo, L. Milenka; Jia, Lingling; Goggin, Fiona.plant-insect interaction
1844Impact of taproot N pools on shoot growth of defoliated alfalfa (Medicago sativa L.) differing in nodule effectiveness
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Mineral NutritionCunningham, Suzanne M.; Chang, Shyh-Rong; Volenec, Jeffrey J..alfalfa
Medicago sativa
defoliation
2593Implication of BRICK1 in protonema cell elongation of Physcomitrella patens
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Growth and Vegetative DevelopmentPerroud, Pierre-François; Quatrano, Ralph S..Pyscomitrella patens
cell growth
WAVE/SCAR complex Brick1
protonema
315Improved drought tolerance, nutraceutical value and biomass production of tomatoes by overexpression of inositol polyphosphate 5-phosphatase.
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Metabolic EngineeringKhodakovskaya, Mariya; Hung, Chiu-Yeh; Perera, Imara; Boss, Wendy; Brown, Christopher; Winter Sederoff, Heike.tomato
stress tolerance
transformation
leaf morphology
genome profiling
1376Improved Method for Wheat Varietal Identification by Double Staining IEF Polyacrylamide Gel
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Seed BiologyWu, Yujia; Maxon, Susan; Payne, Richard.wheat varietal identification
IEF gel
1384Improving Drought Tolerance in Medicago truncatula via translational genomics
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Water RelationsZhang, Ji-Yi; Wang, Zeng-Yu; Schachtman, Daniel P.; Udvardi, Michael K..Drought
Medicago truncatula
Profiling
legume
transformation
11Independent origins of syringyl lignin in vascular plants
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Secondary MetabolismWeng, Jing-Ke; Chapple, Clint.lignin biosynthesis
phenylpropanoid metabolism
Selaginella moellendorffii
P450
1230Indications of lipid signaling pathways in the phloem exudate of Arabidopsis thaliana and Perilla ocymoides
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Cell-to-Cell and Long Distance SignalingGuelette, Brandon S; Benning, Urs F; Chamberlin, Beverly; Hoffmann-Benning, Susanne.phloem transport
Lipids
proteins
metabolites
485Indirect activation of the Arabidopsis NBS-LRR protein RPS5 by the Pseudomonas syringae effector AvrPphB
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Plant-Pathogen InteractionsAde, Jules; DeYoung, Brody; Golstein, Catherine; Innes, Roger.AvrPphB
disease resistance
NOD domain
RPS5
Pseudomonas syringae
940Indirect organogenesis of common bean (Phaseolus vulgaris L.): callus induction and shoot regeneration
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Growth and Vegetative DevelopmentArellano, Jesús; Fuentes, Sara Isabel; Castillo-Espana, Patricia; Lara, Miguel; Hernandez, Gerogina.Phaseolus
Indirect organogenesis
genetic transformation
491Indole glucosinolates play a central role in Arabidopsis-aphid interactions
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Plant-Pest InteractionsKim, Jae Hak; de Vos, Martin; Jander, Georg.aphid
plant-insect interaction
Arabidopsis
Myzus persicae
glucosinolate
myrosinase
defense
1666Induction of disease resistance due to infiltration of Agrobacterium tumefaciens into leaves of Nicotiana benthamiana
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Plant-Pathogen InteractionsAtnaseo, Chuthamat; Erickson, Larry R.; Goodwin, Paul H..Agrobacterium
Agro-infiltration
type IV secretion system
plant-microbe interaction
1221Induction of ethanolic fermentation by the herbicide glyphosate
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MetabolismOrcaray, Luis; Igal, Maria; Zabalza, Ana; Royuela, Mercedes.herbicide
amino acid biosynthesis
fermentative metabolism
741Induction of pathogenesis-related proteins during biocontrol of Rhizoctonia solani with Pseudomonas aureofaciens in soybean (Glycine max L. Merr.) plants
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Plant-Pest InteractionsMabood, Fazli.Rhizoctonia solani
Pseudomonas
Soybean
513Influence of Gene Functions and Duplication Mechanisms on the Retention of Duplicate Genes during Land Plant Evolution
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Genome EvolutionHanada, Kousuke; Zou, Cheng; Shiu, Shin-Han.land plant
Stress response
tandem duplication
whole-genome duplication
gene family
2095Influence of genetically modified lignin composition on cell wall chemistry, mechanics, and plant water relations in hybrid poplars (Populus tremula x P. alba)
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Cell WallsAl-Haddad, Jameel; Koehler, Lothar; Mansfield, Shawn; Ewers, Frank, W; Telewski, Frank W..lignin
poplar
syringyl
guaiacyl
Tension wood
cell wall
Populus tremula x alba
Cellulose
crystallinity
biomechanics
Water relations
microfibril angle
F5H
1985Influence of high nighttime temperatures during reproductive development on physiology and yield of spring wheat
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Temperature ResponsesPrasad, P.V. Vara; Pisipati, Sudha; Ristic, Zoran; Fritz, Allan.heat stress
high temperature
grain filling
Photosynthesis
spikelet fertility
phenology
285Influence of various Phosphorus sources on P accumulation and enzyme activities in Duo grass (Duo festulolium)
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Environmental Physiologypadmanabhan, priya; starnes, daniel; Sahi, Shivendra.phosphorus
Duo grass
hyperaccumulator
P accumulation
P sources
571In search of an in-depth understanding of phytoremediation by Phragmites australis
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Heavy Metals and PhytoremediationDavies, Luísa Caetano; Cabrita, Gonçalo; Ferreira, Renata; Carias, Cátia; Novais, Júlio Maggiolly; Martins-Dias, Susete.mRNA
detoxification pathways
glutathione-ascorbate cycle
enzymes
azo-dye
gene expression
356Integrated Functional Genomic Studies of Biotic Stress Responses in the Model Legume Medicago truncatula
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Large Scale Technologies and ResourcesFarag, Mohamed A.; Broeckling, Corey D.; Huhman, David V.; Urbanczyk-Wochniak, Ewa; Lei, Zhentian; Nagaraj, Satish; Watson, Bonnie S.; Naoumkina, Marina; Deavours, Bettina; Dixon, R. A.; Sumner, Lloyd W..Medicago truncatula
Functional genomics
proteomics
metabolomics
biotic stress
2499Integrating Computational Thinking into Biology Education and Outreach
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Education & OutreachNapoli, Carolyn.
2094Integration of metabolite with transcript and enzyme activity profiles of the antioxidant system in soybeans when grown at elevated levels carbon dioxide and ozone
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Global ChangeGillespie, Kelly M; Chae, June M; Leakey, Andrew D B; Ainsworth, Elizabeth A.SoyFACE
Elevated CO2
elevated O3
antioxidant
1878Integration of root growth and auxin action through pH and ROS
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Growth and Vegetative DevelopmentMonshausen, Gabriele; Gilroy, Simon.ROS
auxin
root growth
pH
gravitropism
337Interaction-dependent localization of flavonoid enzymes in Arabidopsis
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Secondary MetabolismWinkel, Brenda S. J.; Ramirez, Melissa.flavonoid biosynthesis
chalcone synthase
multienzyme complexes
nuclear localization
1882Interactions between ASYMMETRIC LEAVES2 and KANADI regulate the balance between adaxial and abaxial fate
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Growth and Vegetative DevelopmentLin, Wan-ching; Wu, Gang; Huang, Tengbo; Kerstetter, Randall A.; Poethig, R. Scott; Springer, Patricia S..polarity
AS2
KAN
PHB
YAB
753Interactions between drought responses and phytochrome pathways
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Integrative Plant PhysiologyBoggs, Julian; Bibee, Katherine; Heschel, Shane.Phytochrome
drought stress
985Interactions between plant natriuretic peptide and abscisic acid
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Hormone BiologyWang, YH; Ludidi, N; Cahill, DM; Gehring, CA; Irving, HR.PNP
ABA
913Interactions between Si and synthetic chelators (EGTA and EDTA) on Cd uptake, photosynthesis and morphology of hydroponically-grown rice seedlings (Oryza ativa L.) under Cd stress.
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Mineral NutritionNwugo, Chika; Huerta, Alfredo J..Silicon
EGTA
EDTA
rice
hyperaccummulation
Photosynthesis
stomatal conductance
1266Interactions of arabinogalactan-proteins (AGPs) with molecular components of the cytoskeleton, plasma membrane and cell wall in tobacco (BY-2) cells
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Cell WallsSardar, Harjinder S.; Showalter, Allan M..Arabinogalactan-protein
Hechtian strands
Yariv reagent
microtubules
F-actin
amiprophosmethyl
cytochalasin-D
GFP-LeAGP1
GFP-MBD
235Interactive approach to teaching PCR theory and primer design using bioinformatics and problem-based learning
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Education & OutreachRobertson, Amber L.; Phillips, Allison.scientific teaching
primer design
PCR
bioinformatics
1575IntrEST - a database of highly conserved coding sequences containing putative intron splice sites
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Modeling and Computational BiologyIlut, Daniel; Doyle, Jeff J..intron
Database
EST
bioinformatics
2187Investigating Roles for Glutamate Receptor-Like Genes in Growth Responses to Root Crowding
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Integrative Plant PhysiologyBacsik, Mary; Durham, Tessa; Spalding, Edgar.glutamate receptor
root growth
GLR
root exudation
2692Investigating the regulation of sterol biosynthesis in Nicotiana benthamiana
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MetabolismSuza, Walter; Chappell, Joe.mevalonate pathway
sterol regulation
Nicotiana benthamiana
2724Investigating the role of ETA2/CAND1 in regulating SCF complex activity
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Hormone BiologyZhang, Wenjing; Ito, Hironori; Gray, William M..auxin
ubiquitination
SCF
CAND1
2672Investigating the role of root anatomy in phosphorus-mediated regulation of arbuscular mycorrhizal colonization
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Plant-Symbiont InteractionsSharda, Jori N; Koide, Roger T.arbuscular mycorrhiza
phosphorus
root anatomy
1730In vitro conditions for examination of early cotyledonary to maturation stage cotton embryos
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Seed BiologyArnold, Marianne; Gould, Jean.Gossypium
Embryo development
gossypol
110In vitro molecular and cytogenetic study of some Egyptian date palm (Phoenix dactylifera L.) cultivars
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Plant biotech & Risk AssessmentYacout, Mohamed; El-Assar, Ashraf; ElFaras, Wafaa.date palm
somaclonal variation
chromosome instabilities
peroxidase
2578In vivo metabolite flux measurement in plants
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Emerging TechnologiesOkumoto, Sakiko; Chaudhuri, Bhavna; Frommer, Wolf-Bernd.biosensor
FRET
glucose
glutamate
2362In vivo tagging and subcellular targeting of myosin XI isoforms of Arabidopsis thaliana
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Cytoskeleton Structure and DynamicsSattarzadeh, Amirali; Schmelzer, Elmon; Hanson, Maureen R..myosin
molecular motor
cytoskeleton
Arabidopsis
Organelle
493Involvement of "senescence associated vacuoles" in the degradation of chloroplast proteins in tobacco leaves
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Organelle BiologyMartinez, Dana E; Costa, Lorenza; Otegui, Marisa; Guiamet, Juan J.leaf senescence 
protein degradation
vacuoles
1081Involvement of a Dual Specificity Protein Phosphatase In Plant Defense Responses
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Intracellular SignalingTaylor, Ann; Pedley, Kerry; Martin, Gregory.phosphatase
MAP kinase
1420Involvement of a novel phospholipase C in hypoxia signaling pathways in Arabidopsis
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Intracellular SignalingLin, Ter-yun; Shih, Ming-che.Arabidopsis
jasmonic acid
Hypoxia Signaling
AtMYC2
ADH
519Involvement of benzaldehyde dehydrogenase in benzoic acid biosynthesis in snapdragon flowers
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Secondary MetabolismLong, Michael; Kaminaga, Yasuhisa; Nagegowda, Dinesh A.; Ho, Kwok Ki; Weiner, Henry; Kish, Christine; Dudareva, Natalia.secondary metabolism
Aldehyde dehydrogenase
Floral scent
974Involvement of Calmodulin in GABA Shunt Regulation and Thermotolerance in Arabidopsis thaliana under Heat Stress
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Temperature ResponsesAl-Quraan, Nisreen; Locy, Robert; Braam, Janet; Singh, Narendra.GABA
glutamate
alanine
heat stress
glutamate decarboxylase
Calmodulin
Arabidopsis
333Involvement of the Solanum chacoense MAPKKK ScFRK1 in embryo sac development
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Reproductive DevelopmentLafleur, Edith; Kapfer, Christelle; Gray-Mitsumune, Madoka; Matton, Daniel P..Embryo sac development
pollen tube guidance
egg apparatus
kinase
1508Ionic Stimulation Induces Fast Bioelectrochemical Signaling in Green Plants
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Cell-to-Cell and Long Distance SignalingRanatunga, Don Rufus; Volkova, Maia; Volkov, Alexander.Action potential
Electrophysiology
2002Is calcium involved in the phosphate signaling?
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Mineral NutritionTseng, Ching-Ying; Aung, Kyaw; Chiou, Tzyy-Jen.Phosphate
148Isoflavone mediated auxin-transport regulation is not critical for soybean nodulation by Bradyrhizobium japonicum
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Plant-Symbiont InteractionsSubramanian, Senthil; Stacey, Gary; Yu, Oliver.nodulation
auxin
flavonoids
Soybean
1874Isolation and characterization of a gene involved in soybean nodulation
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Mechanisms of Gene RegulationEckert, Helene; Clemente, Thomas E; Stacey, Gary; Shoemaker, Randy C.; Wang, Kan.nodulation
Glycin max
NSP2
nitrogen fixation
Bradyrhizobium japonicum
284Isolation and Characterization of Arabidopsis Translation Initiation Factors Required in Plum Pox Virus Infection
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Plant-Pathogen InteractionsGriffiths, Jonathan S.; Wang, Aiming.Plum pox virus
translation initiation
plant-virus interaction
recessive resistance
protoplasts
1031Isolation and characterization of exon junction complex (EJC) in plants and study the function of two EJC core proteins Mago and Y14
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Mechanisms of Gene RegulationAzhakanandam, Kasi; Qu, Rongda.EJC
Mago
Y14
232Isolation and Characterization of Proteins Associating with Calcium Oxalate Crystals
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Organelle BiologyWyman, Aaron J.; Klanrit, Preekamol; Manalo, John P. M.; Ali, Ahson; Walker, Sheryl A.; Anderson, Carrie M.; Webb, Mary Alice.Calcium
oxalate
biomineralization
crystal
raphide
proteins
Hip
2147Isolation and characterization of Rubisco small subunit αN-methyltransferase
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Protein Modification and TurnoverDirk, Lynnette M.A.; Houtz, Robert L..methylation
rubisco
Rubisco Large Subunit Methyl Transferase
small subunit
192
Canceled
Isolation and characterization of the gene encoding an inhibitor against A. flavus ¥á-amylase, lectin like bifunctional protein from L. purpureus
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Plant-Pathogen InteractionsKim, Young-Hwa; Woloshuk, Charles P.; Song, Young-Sun; Huh, Gyung-Hye.labAI
Lablab purpureus
¥á-amylase inhibitor activity
lectin activity
Aspergillus flavus
aflatoxin
783Isolation of Novel Chinese Cabbage (Brassica rapa L.) MAP Kinase Gene, BrMAPK3 Which Accumulates Rapidly in Response to Environmental Stresses in Transgenic Arabidopsis thaliana
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Mechanisms of Gene RegulationKang, Kwon-Kyoo; Jung, Yujin; Arvin, Tulga; Dane, Fenny; Nou, Ill-Sup.kinase
abiotic and biotic stresses
B. rapa
1225Isolation of RNA from Crystal-Containing Idioblast Cells in the Leaves of the Tropical Aroid Dieffenbachia
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Secondary MetabolismPrall, Brian C.; Howard, Brad; Hensley, Jeremy L.; Coté, Gary G..Dieffenbachia
crystal
idioblast
Calcium
oxalate
mRNA
558Is rhamnogalacturonan-I a key scaffolding element in the pectin network of arabidopsis cell walls?
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Cell WallsZhou, Shaohua; Carpita, Nicholas C; McCann, Maureen C.Arabidopsis
cell wall
rhamnogalacturonan-I
rhamnogalacturonan lyase
Pectin
cell expansion
2682JOINTLESS is a pleiotropic regulator of tomato development --- --- A MADS-box gene that might regulate auxin production or perception
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Hormone BiologyKang, Hui; Sims, Thomas.JOINTLESS
mads-box
auxin
Abscission
tomato
MADS box
MADS-box gene
257KEG, a Novel RING E3/Kinase/Ankyrin Protein Essential for Arabidopsis Growth and Development is Involved in Abscisic Acid Signaling
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Protein Modification and TurnoverStone, Sophia; Williams, Luis; Farmer, Lisa; Vierstra, Richard; Callis, Judy.RING E3 ligase
ubiquitination
Abscisic Acid
kinase
ABI5
Hormone signaling
Phosphorylation
Post-germination development
protein degradation
Ankyrin repeats
Stress response
512KFR1, A novel Kelch-domain, F-box protein regulates ubiquitination-dependent transcript stability
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Mechanisms of Gene RegulationMadzima, Thelma; Kaufman, Lon; Folta, Kevin M..Transcript stability
blue light
F-Box protein
ubiquitination
38Lactiferous glands metabolic productions of Gemmaz, an Egyptian folkloric plant
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Photosynthesis(Light)Arafa, Raafat.
2141Large scale Tnt1 tagging in Medicago truncatula reveals preferential targeting of exons
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Plant-Symbiont InteractionsTadege, Million; Wen, Jiangqi; He, Ji; Tu, Haidi; Kwak, Younsig; Zhao, Patrick X.; Ratet, Pascal; Mysore, Kiran S..Tnt1
Medicago
retrotransposon
tagging
440Laser capture microdissection (LCM) and microarray analysis of the formation of the syncytium made by Heterodera glycines in roots of Glycine max
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Plant-Pathogen InteractionsKlink, Vincent; Overall, Christopher; MacDonald, Margaret; Matthews, Benjamin.laser capture microdissection
199Leaf calcium oxalate crystal structure and its role in defense against a chewing insect in Medicago truncatula.
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Plant-Pest InteractionsKorth, Kenneth L.; Park, Sang-Hyuck; Nakata, Paul.legume
Lepidoptera
defense
1001Light-activated histidine kinases in three bacteria-Pseudomonas syringae (plant pathogen), Brucella species (animal pathogens), and Erythrobactor litoralis (marine bacterium) utilize a LO
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PhotomorphogenesisSwartz, Trevor E.; Tseng, Tong-Seung; Frederickson, Marcus A.; Paris, Gaston; Comerci, Diego J.; Rajashekara, Gireesh; Kim, Jung-Gun; Mudgett, Mary Beth; Splitter, Gary A.; Ugalde, Rodolfo; Goldbaum, Fernando A.; Briggs, Winslow R.; Bogomolni, Roberto A..LOV domain
phototropin
Brucella
Bacterial photoreceptors
Histidine kinase
2691Light Regulated Expression of PEX11b Gene in Arabidopsis
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PhotomorphogenesisDesai, Mintu.
1668Light regulation of cell wall biosynthesis in the maize mesocotyl
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Cell WallsWalton, Jonathan.cell wall
transcriptional regulation
cellulose synthase like gene
2070Lignin Acylation in Grasses
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Cell WallsMarita, Jane M.; Hatfield, Ronald; Frost, Kenneth.lignin
cell wall
acylation
p-coumarate
p-coumaroylation
2621Ligulelessnarrow, a dominant mutation in maize development
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Growth and Vegetative DevelopmentMoon, Jihyun; Hake, Sarah.Leaf development
maize
1201Lipid polyester deposition in seeds of Brassica napus and Arabidopsis thaliana mutants
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LipidsMolina, Isabel; Ohlrogge, John; Pollard, Mike.lipid polyesters
seed coat
Brassica napus
Arabidopsis thaliana
knockout mutants
983Localization and function of beta adaptin in Arabidopsis thaliana
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Protein Targeting and Vesicular TraffickingPark, Hee Jin; Peer, Wendy; Murphy, Angus.adaptin
protein traffic
clathrin
453Long Distance Signals Regulate Lateral Root Emergence in Arabidopsis thaliana
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Cell-to-Cell and Long Distance SignalingDeak, Karen; Muday, Gloria K; Malamy, Jocelyn.lateral root
auxin
Abscisic Acid
1318LONGIFOLIAs regulate longitudinal cell elongation in Arabidopsis
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Growth and Vegetative DevelopmentLee, Young Koung; Kim, Gyung-Tae; Park, Jeongmoo; Kim, In-Jung; Choi, Giltsu; Chung, Won-Il.cell expansion
265Loss of Stability: a New Model for Turgor-driven Cell Wall Extension Growth in cylindrical plant cells
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Cell WallsWei, Chunfang; Lintilhac, Philip.Cell enlargement
Stress relaxation
Turgor pressure
growth
cell wall
147Low temperature induces SIZ1-mediated sumoylation of ICE1 that controls CBF3/DREB1A expression and freezing tolerance
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Temperature ResponsesMiura, Kenji; Jin, Jing Bo; Lee, Jiyoung; Yoo, Chan Yul; Stirm, Vicki; Miura, Tomoko; Bressan, Ray A.; Yun, Dae-Jin; Hasegawa, Paul M..SUMO
sumoylation
cold-signaling
308Luciferase-based genetic screening of cadmium response mutants
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Heavy Metals and PhytoremediationSung, Dong-Yul; Schroeder, Julian.Cadmium
Mutant Screening
Luciferase
heavy metal
Arabidopsis
1107LWD1 and LWD2, two new players in Arabidopsis leaf morphogenesis and photoperiod regulation.
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Growth and Vegetative DevelopmentWang, Ying; Wu, Jing-Fen; Wu, Shu-Hsing.light
circadian
1728Maize beta-Glucosidase Aggregating Factor (BGAF) Homolog from Sorghum is a Mannose-specific Chimeric Lectin
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Plant-Pest InteractionsKittur, Farooqahmed S.; Yu, Hyun Young; Bevan, David R.; Esen, Asim.BGAF
Beta-glucosidase
500Maize cell wall gene network: A plant systems approach towards enhancing biomass for biofuels
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Genome EvolutionPenning, Bryan; Tewari, Jagdish; Hunter III, Charles; Olek, Anna; Vermerris, Wilfred; Davis, Mark; Thomas, Steven; Koch, Karen; McCarty, Donald; McCann, Maureen; Carpita, Nicholas C.cell wall
genomics
comparative functional genomics
maize
FTIR
mutants
C4 grass
2204Manipulating the expression of glutathione S-transferases to modify herbicide tolerance
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Plant biotech & Risk AssessmentTakahashi, Kana; Zhang, Qin; Meetam, Metha; Masaaki, Sakuta; Riechers, Dean; Goldsbrough, Peter.glutathione
glutathione S-transferases
herbicide
Tolerance
safener
chloroacetamide
344MAP kinases in ROS-mediated ABA Signaling
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Hormone BiologySong, Charlotte; Kwak, June.Hormone signaling
reactive oxygen species
MAP kinases
abiotic stress
2288Mapping loci involved in nonrandom mating in Arabidopsis thaliana
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Reproductive DevelopmentToups, Megan; Preuss, Daphne; Swanson, Robert.Nonrandom
reproduction
pollen
fertilization
Arabidopsis
1660Mapping of β-Glucosidase Aggregation Factor Binding Regions and Identification of Specific Amino Acids on the Maize β-Glucosidase Isozyme Glu1 that are Involved in Glu1-BGAF Interaction
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Plant-Pest InteractionsYu, Hyun Young; Kittur, Farooqahmed S.; Bevan, David R.; Esen, Asim.
2072Mapping of the Rag1 aphid resistance locus of soybean with microarray-generated SNP markers
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Emerging TechnologiesKaczorowski, Karen; Kim, Ki Seung; Diers, Brian; Hudson, Matthew.SNP discovery
SFP
1280Marker-based approaches for the cloning of the Avr6 gene in Ustilago hordei.
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Plant-Pathogen InteractionsAli, Shawkat; Bakkeren, Guus.Cloning
Avr6
Ustilago hordei
barley
244Mass propagation and improvement of Arundo donax a promising biomass energy crop
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Bio-Energy CropsMarton, Laszlo; Czako, Mihaly; Pollock, Robert.Arundo
biomass/energy
mass propagation
somaclonal breeding
1754Measurement of stem respiration of sycamore trees involves internal and external fluxes of CO2 and transport of CO2 from roots
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Environmental PhysiologyTeskey, Robert; McGuire, Mary Anne.dark respiration
sap flux
204Mechanisms for oxygen sensing and balancing in naturally hypoxic crop plant seeds
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Seed BiologyRolletschek, Hardy; Wobus, Ulrich; Borisjuk, Ljudmilla.hypoxia
crop
2378Mechanisms of UV-B Perception in Arabidopsis thaliana
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Environmental PhysiologyKim, Yu Kwang.Arabidopsis thaliana
UVB perception
388Medicago truncatula DMI1 localizes to the nuclear envelope and regulates Nod factor-induced calcium spiking
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Plant-Symbiont InteractionsVenkateshwaran, Muthusubramanian; Riely, Brendan K.; Peiter, Edgar; Sun, Jongho; Heckmann, Anne B.; Lougnon, Geraldine; Edwards, Anne; Otegui, Marisa; Freshour, Glenn; Hahn, Michael G.; Sanders, Dale; Oldroyd, Giles E. D.; Downie, Allan J.; Cook, Douglas R.; Ane, Jean-Michel.Legume nodulation
Symbiosis
ion channel
480MEKK1 kinase impaired mutant suggests a scaffolding function that is required for MPK4 activation in Arabidopsis
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Intracellular SignalingSuarez Rodriguez, Maria Cristina; Adams-Phillips, Lori; Liu, Yidong; Wang, Huachun; Su, Shih-Heng; Jester, Peter; Zhang, Shuqun; Bent, Andrew; Krysan, Patrick J..MAPKK Kinase
flg22
biotic stress
MAPK cascade
399Meta!Blast: development of a video game of cell and metabolic biology
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Education & OutreachBassham, Diane; Brown, Trevor; Brown, Tyler; Dickerson, Julie; Herrnstadt, Steve; Kabala, David; Miller, Elizabeth; Syrkin-Nikolau, Mashette; Vue, Gaoder; Wurtele, Eve.plant cell biology
metabolic biology
gene regulation
game
education
virtual reality
307Metabolic, Genomic and Biochemical Analyses Identify Novel Genes Involved in Attracting Natural Enemies of Rice Herbivores
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Plant-Pest InteractionsYuan, Joshua S.; Wiggins, Greg; Grant, Jerome; Chen, Feng.Indirect defense against insects
Integrated genomics
2491Metabolic analysis of maltol and maltol glycoside in Cercidiphyllum japonicum
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MetabolismOgita, Shinjiro; Himeno, Arisa; Kato, Yasuo.Cercidiphyllum japonicum
maltol
callus
2306Metabolic engineering and transport properties of raffinose family oligosaccharides
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Integrative Plant PhysiologyRaghunandan, Janhavi; Jagendorf, Andre T; Turgeon, Robert; Ayre, Brian G..phloem
transport
raffinose family oligosaccharides
metabolic engineering
1136Metabolism of flavin nucleotides in plants
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MetabolismSandoval, Francisco J; Roje, Sanja.FMN
FAD
flavin nucleotides
metabolism
1629Metabolomical Changes during Systemic Acquired Resistance and Some Novel Bioactive Compounds for Defense Responses in Arabidopsis
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Plant-Pathogen InteractionsJung, Ho Won; Tschaplinski, Timothy J; Greenberg, Jean T..Metabolomical changes and Bioactive compounds
572Methylmethionine (“vitamin U”) enhances stress tolerance of green algae grown in polluted water
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Environmental PhysiologyFodorpataki, Laszlo; Bartha, Laszlo; Marton, Attila L..stress tolerance
vitamin U
heavy metal
green alga
63Methyl Salicylate is a Critical Mobile Signal for Plant Systemic Acquired Resistance
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Plant-Pathogen InteractionsPark, Sang-Wook; Kaimoyo, Evans; Mosher, Stephen; Kumar, Dhirendra; Klessig, Daniel F..systemic acquired resistance
salicylic acid
salicylic acid-binding protein 2
methyl salicylate
mobile SAR signal
230Microarray analysis and comparative genomics identifies conserved regulatory genes involved in flowering and seasonal bud dormancy
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Growth and Vegetative DevelopmentHorvath, David; Anderson, James V.; Fennell, Anne; Taylor, Mark; Chao, Wun.dormancy
vegetative buds
comparative functional genomics
1846Microarray analysis of gene expression in ozone exposed Medicago truncatula
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Oxidative StressPuckette, M; Mahalingam, R.Medicago truncatula
microarray
oxidative stress
ozone
240
Canceled
MicroRNA (miRNA) regulation of gene expression differs in Embryo and Female Gametophyte tissues during Embryogenesis of Loblolly Pine (Pinus taeda).
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Growth and Vegetative DevelopmentOh, Thomas; Wartell, Roger; Cairney, John; Pullman, Gerald.Loblolly pine
Pinus taeda
embryogenesis
microRNA
miRNA
zygotic embryo
somatic embryo
female gametophyte
megagametophyte
development
regional amplification PCR
RA-PCR
auxin response factor 8-like
ARF8L
qRT-PCR
Argonaute
forest
797Microscopy: Crossing Disciplinary Boundaries
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Education & OutreachHou, Guichuan; Henson, Dru A.microscopy
developmental imaging
2706Microtubule arrays at the cytokinesis-interphase transition
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Cytoskeleton Structure and DynamicsLucas, Jessica R; Sack, Fred D.microtubule
cytokinesis
interphase array
epidermis
cell cycle
nucleation
411
Canceled
Mineral composition in Vitis vinifera (vitaceae), Apium graveolen (Apiaceae), Trigonella foenum (Fabaceae), Coriandrum sativam (Apiaceae), Brassica campestris (Cruciferae) plants of Balochistan
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Mineral NutritionAsma Yousafzai, Asma.Mineral nutrition
Edible plants
96Mining Genetic Diversity of Sweet Sorghum in the US Collection for Biofuel Production
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Bio-Energy CropsWang, Ming Li; Erpelding, John; Yu, Jianming; Pederson, Gary.biofuel-crop
Genetic diversity
2660Mobiles for Studying Plant Adaptations to Water Stress
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Water RelationsAl-Jamali, Abbas F..Mobiles Photomicroscopy
Water stress adaptations
Pinus Nerium Avena
Stomata Bulliform
2626Model evaluation of the phytoremediation potenital in hyperaccumulators and nonhyperaccumulators
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Heavy Metals and PhytoremediationYeh, Kuo-Chen; Liang, Hong-Ming.
321Modeling of branching patterns in plants
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Modeling and Computational BiologyMorozova, Nadya; Volpert, Vitaly; Bessonov, Nikolai.pattern formation
branching
phyllotaxis
530Modeling of plant P450 monooxygenase structures: a three-dimensional perspective on the evolution of their catalytic activities
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Secondary MetabolismRupasinghe, Sanjeewa G.; Schuler, Mary A..cytochrome P450
molecular modeling
Arabidopsis
catalytic sites
secondary metabolism
1648Modeling Xylem Sectoriality and Hydraulic Conductance: Anatomical Bases and Ecological Significance
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Integrative Plant PhysiologyThorn, Alexandra; Orians, Colin M..sectoriality
Ohm's law analogy
hydraulic architecture
hydraulic conductance
cavitation
embolism
Water relations
ring-porous
diffuse-porous
xylem structure and function
1345Modified rice GluB-1 promoter for high-level foreign gene expression in transgenic rice
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Plant biotech & Risk AssessmentHong, Chwan-Yang; Liu, Li-Fei; Yu, Su-May.Modified GluB1 promoter
Transgenic rice
TA box
2246Modulation of soybean, Glycine max defenses to herbivory by Japanese beetles (Popillia japonica) under ambient and elevated atmospheric CO2
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Plant-Pest InteractionsCasteel, Clare; Zavala, Jorge; Berenbaum, May; De Lucia, Evan.global change
insect herbivory
plant defense
1650Modulation of Toc GTPase Activity and Conformation by Substrate, Homotypic and Heterotypic Interactions
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Protein Targeting and Vesicular TraffickingReddick, L. Evan; Wright, Sarah J.; Chotewutmontri, Prakitchai; Wright, Stephen; Bruce, Barry D..Toc
GTPase
Chloroplast
Dimerization
transit peptide
226
Canceled
Molecular adaptations to potassium deficiency
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Mineral NutritionSchachtman, Daniel P.; Shin, Ryoung; Huppert, Kari A.; Jung, Jiyul; Kim, Min Jung.Mineral nutrition
growth
potassium
auxin
kinase
806Molecular analysis of photosynthetic acclimation to altered spectral quality
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Photosynthesis(Light)Goins, Gregory; Smith, Mary.Photosynthesis
light
spectral quality
redox
plastiquinone
photoreceptor
1756Molecular and Functional Characterization of Ethylene-Responsive MAP Kinases Associated with the Rice Defense Response
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Plant-Pathogen InteractionsBailey, Tameka Arnett; Yang, Yinong.rice
MAP kinase
Signal transduction
disease resistance
abiotic stress
2503Molecular Approaches for Structural Characterization of Chalcone Synthase: cDNA Cloning, Molecular Modeling and Comparative Sequence Analysis among Vitis species
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Plant-Pest InteractionsLouime, Clifford; Lu, Jiang; Huang, Hong; Uckelmann, Hannah.Vitis
disease resistance
chalcone synthase
1312Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic phenotypes
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Growth and Vegetative DevelopmentSu, Hsing-Min; Leu, Wei-Ming.leaf senescence 
201Molecular Characterization of Rice Vacuolar Sorting Receptor Proteins
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Protein Targeting and Vesicular TraffickingLiu, Yang; Jiang, Liwen.OsVSR Subcellular Localization GFP
1223Molecular Cloning and characterization of FT gene in Phalaenopsis bellina
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Reproductive DevelopmentChen, Chin-Fun; Tsay, Hsin-Sheng; Huang, Hsiao-Shan.Phalaenopsis bellina
flowering time
2701Molecular evolution of LysM type receptor-like kinases in plants
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Genome EvolutionZhang, Xue-Cheng; Wu, Xiaolei; Findley, Seth; Wan, Jinrong; Libault, Marc; Nguyen, Henry; Cannon, Steven; Stacey, Gary.LysM
receptor kinase
molecular evolution
1748Molecular genetic studies indicate that maternal mitochondrial leucine catabolism is required for normal seed development in Arabidopsis thaliana
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MetabolismDing, Geng; Che, Ping; Ilarslan, Hilal; Wurtele, Eve; Nikolau, Basil J.Biotin
Leucine catabolism
Methylcrotonyl-CoA carboxylase
T-DNA knock-out allele
444Molecular Identification and Characterization of Genes Related to Cotton Fiber Initiation and Development Using the Cotton Mutant, Ligon Lintless-1 (Li-1)
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Growth and Vegetative DevelopmentBolton, James J; Soliman, Khairy; Wu, Zhengdao; Wilkins, Thea; Jenkins, Johnie.
838Molecular mechanism of the transcriptional repression mediated by a plant specific transcriptional repression domain, EAR-motif, in Arabidopsis
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Mechanisms of Gene RegulationUmemura, Yoshimi; Hiratsu, Keiichiro; Ohme-Takagi, Masaru.transcriptional repression
EAR-motif
CRES-T
Yeast-two hybrid
442Molecular Mechanisms for KNOX Gene Silencing by the Arabidopsis ASYMMETRIC LEAVES1 Complex
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Growth and Vegetative DevelopmentGuo, Mengjuan; Julie, Thomas; Galen, Collins; Marja, Timmermans.KNOX
AS1-AS2
antisense RNA
Gene Silencing
protein-DNA interaction
1472Multiple phytochromes mediate progeny germination responses to temperature and light quality in the maternal environment
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Seed BiologyDechaine, Jennifer M; Weinig, Cynthia.Phytochrome
Transgenerational effects
seed germination
Light quality
temperature
885Multiple vacuolar sorting determinants exist in soybean 11S globulin
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Protein Targeting and Vesicular TraffickingMaruyama, Nobuyuki; Leong, Ching Mun; Tatsuhara, Miyuki; Ishimoto, Masao; Utsumi, Shigeru.vacuolar sorting determinant
glycinin
Protein storage vacuole
2006Mutants of putative sugar transporters show altered carbohydrate levels in Arabidopsis thaliana
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Photosynthesis(Carbon)Trukhina, Yulia; Weber, Andreas.Plastid
sugar transporter
Golgi
1651Mutations in FtsZ1 affecting chloroplast division
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Organelle BiologyYoder, David; Kadirjan-Kalbach, Deena; Olson, Bradley; Miyagishima, Shin-ya; DeBlasio, Stacy; Hangarter, Roger; Osteryoung, Katherine. FtsZ
1500Mutator transposition alters the proteome and transcriptome of maize anthers
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Reproductive DevelopmentSkibbe, David; Zhang, Xin; Suzuki, Nagi; Fernandes, John; Morrow, Darren; Burlingame, Al; Walbot, Virginia.Zea mays
Mutator
Anthers
proteomics
genomics
Transposons
2451Myo-inositol-1-phosphate Synthase is Required for PIN2 Cycling and Organ Development
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Growth and Vegetative DevelopmentChen, Hao; Xiong, Liming.Auxin transport
inositol
pattern formation
PIN2 cycling
515Myosin motors are required for optimal tip growth of root hairs
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Cytoskeleton Structure and DynamicsNebenführ, Andreas; Park, Eunsook; Soltanian, Niloufar.myosin
root hair
organelle movement
cytoplasmic streaming
127N-acylethanolamine (NAE) metabolism impacts growth and interacts with ABA signaling in Arabidopsis thaliana seedlings
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Hormone BiologyBlancaflor, Elison B; Teaster, Neal; Tang, Yuhong; Motes, Christy M; Wang, Yuh-Shuh; Wiant, William C; Cotter, Matthew Q; Kilaru, Aruna; Venables, Barney J; Hasenstein, Karl; Gonzalez, Gabriel; Chapman, Kent D.Arabidopsis
Abscisic Acid
Lipids
N-acylethanolamine
1417N-myc Down Regulated Arabidopsis homologue (AtNDR1) operates in Gbeta-gamma signaling pathway to regulate meristem development
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Growth and Vegetative DevelopmentMudgil, Yashwanti; Jones, Alan.NDR1
intracellular signaling
Gbeta-gamma
pollen
meristem
micro RNA
vegetative growth
99Na+ entrance into rice genotypes: By-pass flow or transporters?
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SalinityRoshandel, Parto.Na+  influx
rice
by-pass flow
salt stress
transporters
811Nanoparticles mediated plant genetic transformation
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Emerging TechnologiesTorney, Francois; Trewyn, Brian; Lin, Victor; Wang, Kan.Plant transformation
561Natural Genetic Diversity and Population Structure of Arabidopsis thaliana in the U.S. Midwest and World-wide Collections
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Emerging TechnologiesLi, Yan; Borevitz, Justin.Natural variation
Arabidopsis thaliana
population structure
tiling array
SNP
association mapping
AtSNPtile1
Genetic diversity
1731Natural variation in the allopolyploid Arabidopsis suecica
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Genome EvolutionHenkhaus, Natalie; Jurevic, Leigh; Espey, John; Kahsai, Emanual; Clark, Chanel; Madlung, Andreas.Allopolyploidy
polyploid
Arabidopsis suecica
180Nitric Oxide and cGMP Signaling in Calcium Dependent Cell Polarity Development in Ceratopteris richardii
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Intracellular SignalingPorterfield, DM; Salmi, ML; Morris, KE; Roux, SJ.nitric oxide
cGMP
Calcium
plant cell biology
cell polarity
2582Nitrite transport in Aspergillus nidulans is mediated by high-affinity nitrate transporters nrtA, nrtB and by a nitrite-specific nitA transporter
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Membrane TransportWang, Ye; Li, Wenbin; Siddiqi, Yaeesh; Kinghorn, James R.; Unkles, Shiela E.; Glass, Anthony D.M..Nitrate Transporter
nitrite transporter
Aspergillus nidulans
969Nitrogen/Sulfur mapping in genetically modified soybean
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Emerging TechnologiesBerg, Howard; Schmidt, Monica; Herman, Eliot.transgenic soybean
EELS
sulfur
zein
1392Nitrogen deficiency-induced senescent A. thaliana rosette leaves accumulate defense-related proteins
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Mineral NutritionWidhalm, Joshua R.; Stone, Julie M.; Paparozzi, Ellen.leaf senescence 
nitrogen deprivation
re-green
TGG2
BGL1
362Nitrogen metabolism, assimilation, and water relations in ectomycorrhizal Populus tremuloides
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Mineral NutritionSiemens, J. Aurea; Zwiazek, Dr. Janusz.nitrogen metabolism
mycorrhizal fungi
pH
nitrate
ammonium
root systems
Populus tremuloides
Hebeloma crustuliniforme
Water relations
2539Nitrogen stress responses of red rice and Wells rice grown in hydroponics
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Environmental PhysiologySales, Marites; Burgos, Nilda; Shivrain, Vinod.Oryza sativa
Nitrogen
Stress response
hydroponics
2700Nitrogen Use Efficiency in Transgenic Canola
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Mineral NutritionManning, Colleen; Theodoris, George; Fazio, Gia; Gallawa, Paul; Omelu, Ndukaku; Palamo, Arona; van Boxtel, Jos; Lu, Zhongjin; Kridl, Jean.Nitrogen
Canola
nitrogen use efficiency
alanine aminotransferase
QPCR
1292Nodulin-Like Transporters From Arabidopsis Are Induced by Wounding and Salicylic Acid
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Membrane TransportVincill, Eric; Roberts, Daniel.salicylic acid
defense
senescence
wounding
119Nonredundant functions of Aux/IAA proteins
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Mechanisms of Gene RegulationTiwari, Shiv; Hagen, Gretchen; Guilfoyle, Tom.
1640Novel and Differential Expression of Ancient Subclasses of the Arabidopsis ACTIN DEPOLYMERIZING FACTOR Gene Family
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Cytoskeleton Structure and DynamicsRuzicka, Daniel, R.; Kandasamy, Muthugapatti K.; McKinney, Elizabeth, C.; Burgos-Rivera, Brunilis; Meagher, Richard, B..actin depolymerizing factor
gene expression
Subcellular localization
1530Novel aspects of cyanogenesis in Eucalyptus camphora subsp. humeana
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Secondary MetabolismNeilson, Elizabeth H; Goodger, Jason QD; Woodrow, Ian E.cyanogenesis
cyanogenic glycoside
defense
ontogeny
Eucalyptus
prunasin
1597Novel aspects of nuclear foci formation in plant DNA damage response
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Environmental PhysiologySánchez-Calderón, L.; Lang, J.; Smetana, A; Montané, M.-H.; Houlné, G.; Chabouté, M.E..DNA damage
DNA double strand break
DNA repair
Foci formation
902Novel expression patterns of SODs in rice
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Oxidative StressTsakirpaloglou, Nikos; Gatehouse, Angharad; Kohli, Ajay.Oryza sativa
superoxide dismutase
reactive oxygen species
expression patterns
299Novel Pathway for IAA Biosynthesis in Maize Endosperm
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Hormone BiologyHendrickson Culler, Angela; Cohen, Jerry D..auxin
Indole-3-acetic acid
biosynthesis
2396NRP1 and NRP2 histone-chaperones are required for maintaining postembryonic root growth
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ChromatinZhu, Yan; Dong, Aiwu; Meyer, Denise; Renou, Jean-Pierre; Shen, Wen-Hui.histone
Chaperone
chromatin-remodeling
Gene Silencing
root growth
DNA damage
537Nuclear and Speckle targetting Signals in a Plant Splicing Factor: Regulation of Intranuclear Mobility by ATP, Phosphorylation and Transcription
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Protein Targeting and Vesicular TraffickingAli, Gul; Reddy, Anireddy S. N..FRAP
Targetting
FLIP
protein traffic
splicing factor
295Nuclear Glucose Signaling through Hexokinase1 and HUPs in Arabidopsis
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Intracellular SignalingCho, Young-Hee; Yoo, Sang-Dong; Sheen, Jen.nuclear HXK1 complex
HXK1 unconventional partner
227NUCLEAR PORE ANCHOR, the Arabidopsis homolog of Tpr/Mlp1/Mlp2/Megator, is involved in mRNA export and SUMO homeostasis and affects diverse aspects of plant development
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Reproductive DevelopmentXu, Xianfeng, Morgan; Rose, Annkatrin; Muthuswamy, Sivaramakrishnan; Jeong, Sun Yong; Venkatakrishnan, Sowmya; Zhao, Qiao; Meier, Iris.Nuclear Envelope
Nuclear Pore
SUMO
flowering
mRNA export
development
464Null mutation of an Arabidopsis copine gene compromises the specificity of calcium signaling
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Plant-Pathogen InteractionsLee, Tzuu-fen; McNellis, Timothy W..calcium influx
defense
copine
calcium signaling specificity
2707Optimization of Gene Silencing Constructs to control Cassava Mosaic Disease
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Plant-Pathogen InteractionsPatil, Basavaprabhu; Bagewadi, Basavaraj; Yadav, Jitender; Taylor, Nigel; Fauquet, Claude.Gene Silencing
Geminivirus
cassava
2480Optimization of growth and lycopene production in callus and cell suspension cultures of Barringtonia racemosa
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Secondary MetabolismBehbahani, Mandana.
1664Optimizing plant arsenic sequestration for environmental clean-up
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Heavy Metals and PhytoremediationPischke, Melissa S.; Kelly, Shelly D.; Ravel, Bruce; Meagher, Richard, B..Phytoremediation
Arsenic
YCF1
221Optimizing Plant Density and Nutrients for Phytoremediation of Arsenic Contaminated Groundwater Using Pteris vittata L. – Chinese Brake Fern
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Heavy Metals and PhytoremediationNatarajan, Seenivasan; Stamps, Robert; Ma, Lena; Saha, Uttam.Pteris vittata
Phytoremediation
Arsenic
Groundwater
1155Organelle binding of myosin XI depends on two interacting globular tail subdomains
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Cytoskeleton Structure and DynamicsLi, Jian-Feng; Nebenführ, Andreas.organelle targeting
myosin XI
structure homology model
tail subdomain
reconstituted tail
2727OsGSK1, an orthologue of Arabidopsis BIN2, enhances tolerance to various abiotic stresses in transgenic rice
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Environmental PhysiologyLee, Sang-Choon; Koh, Serry; Kim, Min-Kyung; Choe, Sunghwa; An, Gynheung; Kim, Seong-Ryong.
242Osmium Tetroxide Degrades the Actin Cytoskeleton in Lily Pollen Tubes
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Cytoskeleton Structure and DynamicsParris, Colleen; Lovy-Wheeler, Alenka; Luetz-Meindl, Ursula; Hepler, Peter K..actin
osmium
2289Over-Expression of Monosaccharide Transporter Affects Growth of Arabidopsis thaliana Seedlings
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MetabolismSchofield, Andrew; Bi, Yong-Mei; Rothstein, Steven J.glucose
sugar transporter
sucrose
growth
1238Overcoming recalcitrance for production of liquid biofuels through lignin modification
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Bio-Energy CropsChen, Fang; Jackson, Lisa A.; Shadle, Gail L.; Dixon, R. A..alfalfa
lignin
biofuels
cell wall
815Overexpression of Arabidopsis ZAT10 Gene Enhances Salt Tolerance in Transgenic Tomato Plants
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Environmental PhysiologySanjaya, Sanjaya; You, Su-Juan; Chan, Ming-Tsair.ZAT10
tomato
genetic engineering
salt stress
crop
274Overexpression of DnaK from a halotolerant cyanobacterium Aphanothece halophytica enhances abiotic stress tolerance of young poplar tree plants
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Environmental PhysiologyTakabe, Tomoko; Shinagawa, Fumi; Terada, Yasutaka; Uchida, Akio; Hibino, Takashi; Takabe, Teruhiro; Kawai, Takayoshi; Takabe, Tetsuko.salinity
Drought
low temperature
poplar
tree
1678Overexpression of Pyrococcus furiosus Superoxide Reductase in Arabidopsis enhances tolerance to heat, drought and pathogen attack
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Oxidative StressIm, Yang Ju; Ji, Mikyoung; Lee, Alice; Grunden, Amy M.; Boss, Wendy.reactive oxygen species
1672Overexpression of the acidic C-terminus region of the HvRAF from barley confers enhanced cadmium tolerance to yeast
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Environmental PhysiologyLi, Kunfeng; Jung, Jinwook; Park, Sang Ryoung; Jung, Younsoo; Kim, Minkyun.
1561Oxidative Stress Response in Two Populations of Thalassia testudinum in the Lower Laguna Madre Texas USA
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Environmental PhysiologyBruce, Jacqueline D; Summy, K. Rod; Whelan III, Thomas; Cavazos, Eloy; Lahner, Brett; Li, Nanbing; Legas, Sheenalay; Adame, John; Peer, Wendy; Murphy, Angus; Persans, Michael W.seagrasses
oxidative stress
Lipid peroxidation
heavy metal
bioindicator
remote sensing
780OXS1, a conserved eukaryotic HMG-box protein that confers resistance to oxidative stress tolerance
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Oxidative StressTsou, Pei-Lan; Song, Wen; Ow, David.Cadmium
diamide
Crm1
2302Oxylipin Profile at the Bolting Transition in Arabidopsis thaliana
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Cell-to-Cell and Long Distance SignalingAlvarez, Rosie; Argumedo, Ruby; Nava, Susana; Vellanoweth, Robert.lipid transfer protein
oxylipin
floral induction
874Pag1, the alpha7 subunit of 20S proteasome, is essential for pollen function
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Protein Modification and TurnoverSoyler-Ogretim, Gulsum; Doelling, Jed.20S proteasome
Pag1
ubiquitination
pollen
protein degradation
1228Participation of actin cytoskeleton in intracellular hexose transporter trafficking
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Membrane TransportKuznetsov, Vladimir V.; Kulikova, Alevtina L.; Meshcheryakov, Anatolii B.; Smolenskaya, Irina N.; Kholodova, Valentina P..actin and hexose transporter
1119Participation of an Endomembrane Cation/H+ Exchanger AtCHX20 in Osmoregulation of Guard Cells
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Membrane TransportPadmanaban, Senthilkumar; Chanroj, Salil; Kwak, June; Li, Xiyan; Ward, John M.; Sze, Heven.Cation/H+ exchanger
guard cell
Endomembrane
1382Pathogen perception signaling cascades in the guard cell: involvement of Ca-conducting CNGC channels, calmodulin, nitric oxide, and hydrogen peroxide
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Plant-Pathogen InteractionsWalker, Robin K.; Ma, Wei; Leng, Qiang; Berkowitz, Gerald.ROS, Ca, cAMP, Ion channel, Hypersensitive response
140PCR and gel electrophoresis, moving beyond the technique: Effects of aligning learning goals with assessments
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Education & OutreachPhillips, Allison; Robertson, Amber L.; Batzli, Janet; Harris, Michelle; Miller, Sarah.undergraduate lab
PCR
gel electrophoresis
GMOs
1080Peach polygalacturonase-inhibiting protein (PGIP) effects against endo-polygalacturonase from A. niger and R. stolonifer
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Plant-Pathogen InteractionsCeron, Abel; Vargas-Arispuro, Irasema; Romo, Gabriela; Islas, Maria; Labavitch, John; Martinez-Tellez, Miguel.PGIP´s
Peach
A. niger
R, stolonifer
777Peptide aptamers that bind to the protein interaction domain of a geminivirus replication protein
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Plant-Pathogen InteractionsNash, Tara; Lopez-Ochoa, Luisa; Hanley-Bowdoin, Linda.plant-virus interaction
1899Petunia R-SNARE/Longin PiVAMP721 promotes vesicle fusion and is important in pollen tube growth
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Reproductive DevelopmentGuo, Feng; McCubbin, Andrew G.SNARE
VAMP
endocytosis
pollen tube growth
146Phenolic gene stacking in soybean to enhance disease resistance and health-promoting value
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Secondary MetabolismLozovaya, Vera; Zernova, Olga; Lygin, Anatoliy; Ulanov, Alexander; Li, Susan; Hill, Curtis; Hartman, Glen; Clough, Steve; Nelson, Randal; Widholm, Jack.Plant transformation
Soybean
multiple transgene
phenylpropanoids
2238Phenotypic analysis of Cellulose Synthase-Like gene knockout alleles in maize
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Cell WallsHunter, C.T.III; Lu, C-A; Avigne, WT; Huang, L-F; Ibekwa, E; McCarty, Donald R; Vermerris, WE; Carpita, Nicholas C; Koch, KE.Cellulose Synthase Like
CSL
uniformMu
hemicellulose
1708Phenotypic Comparison of Four cesa3 Alleles in Arabidopsis thaliana
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Cell WallsPysh, Leonard; Studebaker, Heather; Neuhs, Amy.Cellulose
cell wall
1469Phenotypic Consequences of mRNA decapping defects in Arabidopsis are suppressed by URSULA
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Mechanisms of Gene RegulationFauver, N. A.; Goeres, D. C.; Zhang, W.; Sieburth, Leslie E..seedling development
Leaf development
RNA decay
mRNA decapping
TRIDENT
Arabidopsis
762Phenylalanine is critical to protection from UV radiation in Arabidopsis and soybean.
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Global ChangeWarpeha, K. M.; Carol, A.; Gibbons, J. T.; Tree, R.; Slusser, J.; Kaufman, L. S..Ultraviolet radiation
phenylalanine
phenylpropanoids
blue light
Soybean
1030Phosphate deficiency reduces starch breakdown in beans (Phaseolus vulgaris L.)
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MetabolismBernal-Gracida, Lilia Angélica; Martinez-Barajas, Eleazar.starch excess
phosphorus deficiency
beta-amylase
1911Phosphate Starvation Induced Differential Regulation of Distinct Members of Arabidopsis 14-3-3 Family Reveals Functional Specificity
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Mineral NutritionCao, Aiqin; Jain, Ajay; Baldwin, James C.; Raghothama, Kashchandra G.Phosphate
Arabidopsis
14-3-3 isoforms
GRF9
2110Photoperiodic injury in tomato is a circadian phenomenon caused by alterations in the diel coordination between nitrate and nitrite reductase
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RhythmsDSilva, Lorraine I.; Robertson, James; Robison, Mary; Micallef, Barry J..circadian
photoperiodic injury
nitrate reductase
nitrite reductase
2202Photosynthetic response to moderate heat stress for a temperate and boreal Populus species
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Photosynthesis(Carbon)Hozain, Mohd; Salvucci, Michael E; Holaday, A. Scott.heat stress
Photosynthesis
rubisco
Populus
170Phototropism in space
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TropismsKiss, John; Kumar, Prem; Correll, Melanie J.; Mullen, Jack L.; Hangarter, Roger; Edelmann, Richard E..phototropism
gravitropism
Phytochrome
202Phylloplane Proteins: Emerging Defenses at the Aerial Frontline
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Plant-Pathogen InteractionsShepherd, Ryan; Kroumova, Antoaneta; Wagner, George.trichome
leaf surface
antimicrobial
925Phylogenetic analysis and functional characterization of the SAC9 protein in Arabidopsis and Chlamydomonas
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Intracellular SignalingWilliams, Mary; Smith, Melissa.phosphoinositides
SAC domain
phosphatases
Chlamydomonas
1501Phylogenetic engineering of ribulose-1,5-bisphosphate carboxylase/oxygenase
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Photosynthesis(Carbon)Lim, Boon Hoe; Spreitzer, Robert J..rubisco
Chlamydomonas
Photosynthesis
CO2 fixation
757Phylogenetics versus function: Sequencing and analysis of the floral identity gene LEAFY promoter in Theobroma cacao
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Reproductive DevelopmentBranaman, Tatum J.; Swanson, John-David.LEAFY
Floral development
Arabidopsis
Populus
T. cacao
1736Physcomitrella patens as a heterologous expression system for investigating the functions of CESA-like gene products
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Cell WallsRoberts, Alison; Liepman, Aaron H.; Sorenson, Iben; Willats, William G T; Notis, Christine; Stein, Alexis.Physcomitrella patens
cellulose synthase like gene
2199Physical Response of Physalis Leaves to Eggs of a Specialist Herbivore Decreases Egg Viability
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Plant-Pest InteractionsPetzold, Jennifer; Gould, Fred.plant-insect interaction
neoplasm
plant defense
herbivore
plant-herbivore interactions
Physalis
Heliothis
hypersensitive response
2479Physiological and biochemical characterization of mannitol accumulating transgenic wheat under water deficit stress.
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Oxidative StressVadvalkar, Shraddha.drought tolerance
365Physiological concentrations of salicylic acid prime corn (Zea mays) seedlings against insect herbivory
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Plant-Pest InteractionsEngelberth, Juergen.Priming
salicylic acid
jasmonic acid
volatiles
476Physiological influence of plant mitochondrial genome instability
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Organelle BiologyShedge, Vikas; Arrieta-Montiel, Maria; Xu, Ying-Zhi; Sandu, Ajay Singh; Mohammed, Saleem; Mackenzie, Sally.mitochondria
recombination
male sterile mutant
Arabidopsis
2291Phytochrome Regulation of Branching in Arabidopsis
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Growth and Vegetative DevelopmentChou, Nanyen; Finlayson, Scott.Phytochrome
branching
bud outgrowth
R:FR
Arabidopsis
143Phytoremediation of cyanide compounds in soil-water systems
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Heavy Metals and PhytoremediationEbbs, Stephen; Bushey, Joseph; Dzombak, David; Piccinin, Robert; Baker, Alan.Phytoremediation
cyanide
metal cyanides
stable isotope
102PIF1 directly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis
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PhotomorphogenesisMoon, Jennifer; Zhu, Ling; Shen, Hui; Huq, Enamul.Arabidopsis
Chlorophyll biosynthesis
Light signaling
Phytochrome
gene expression
1041PKS1 and PHYA are involved in red-light-based positive phototropism in roots
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TropismsMolas, Maria L; Palmieri, Maria; Kiss, John.phototropism
PKS1
red light
206
Canceled
Plant Infantry: Arabidopsis thaliana trichomes as defense organs
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Growth and Vegetative DevelopmentDavis, Manli; Morohashi, Kengo; Erich, Grotewold; Rebecca, Lamb.trichome development
defense
621Plant MAPK activation by long chain bases
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Intracellular SignalingSaucedo-García, Mariana; Cruz-García, Felipe; Plasencia, Javier; Gavilanes-Ruíz, Marina.MAPK
long chain bases
fumonisin B1
kinase
738Plant native tryptophan synthase beta 1 gene is a non-antibiotic selection marker for plant transformation
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Plant biotech & Risk AssessmentHsiao, Paoyuan; Sanjaya, Sanjaya; Su, Ruey-Chih; da Silva, Jaime A. Teixeira; Chan, Ming-Tsair.CdCl2
non-antibiotic marker
5' methyl-tryptophan (5MT)
Plant transformation
tryptophan synthase beta 1
595PLANT NEMATODE INTERACTION: tolerance to root knot nematode in Oryza sativa
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Plant-Pathogen InteractionsShrestha, Roshi; Wilson, Mike; Price, Adam.Oryza sativa
root knot nematode
Tolerance
Quantitative trait loci (QTL)
528Plant phenology and heat accumulation
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Growth and Vegetative DevelopmentBiernacki, Maciej.heat accumulation
plant growth and development
quantitative methods
base temperature
phenology
daylight degree-hours
276Plasma membrane aquaporins are widely expressed in maize and form heteromers to regulate plant water movement
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Water RelationsHachez, Charles; Zelazny, Enric; Muylaert, Mélanie; Cavez, Damien; Heinen, Robert; Veselov, Dmitry; Chaumont, François.aquaporin
membrane protein
gene expression
root development
shoot
Water relations
1429Plastidial oleic acid levels modulate defense signaling by regulating expression of resistance genes
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Plant-Pathogen InteractionsVenugopal, Srivathsa; Chandra-Shekara, AC; Roy Barman, Subhankar; Kachroo, Aardra; Kachroo, Pradeep.ssi2
Glycerol
Turnip Crinkle Virus
stearoyl-acyl-carrier-protein-desaturase
138Plastidic type I signal peptidase 1 has a functional role in both the envelope and thylakoids of Arabidopsis chloroplasts.
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Organelle BiologyShipman, Rebecca; Inoue, Kentaro.chloroplast proteases
chloroplast protein transport
organelle biogenesis
signal peptidase
thylakoid
1133Plastid Sedimentation and Localization Studies of arg1 Seedlings in Arabidopsis
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TropismsShiva Kumar, Neela; Spence, Ashley; Kiss, John.gravitropism
arg1
columella
statocytes
Signal transduction
870Polarity Determinants in Arabidopsis Ovule Development
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Reproductive DevelopmentKelley, Dior; Gasser, Charles.ovule
polarity
reproductive development
Seed
412Pollen tubes release ATP as they grow and their continued growth requires the activity of pollen ectoapyrases that hydrolyze the secreted ATP
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Reproductive DevelopmentTorres, Jonathan; Wu, Jian; Roux, Stanley.growth
extracellular ATP
556Polyamine metabolism in response to drought and salt stress including comparative metabolome analysis of the salt response in rice
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Environmental PhysiologyDo, Phuc Thi; Zuther, Ellen; Erban, Alexander; Heyer, Arnd Göran; Köhl, Karin; Kopka, Joachim.polyamine
rice
salt stress
drought stress
Metabolite profile
1519Polyamine regulated gene expression in tomato (Solanum lycopersicum) fruit
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Growth and Vegetative DevelopmentNambeesan, Savithri; Srivastava, Alka; Datsenka, Tatsiana; Mattoo, Autar K.; Handa, Avtar K..tomato
polyamines
development
gene expression
1374Positional Cloning of qSD7-1, a Dormancy Locus Associated with Red Pericarp Color in Weedy Rice
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Seed BiologyGu, Xing-You; Foley, Micheal; Horvath, David; Anderson, James V..Seed dormancy
Positional cloning
1270Posttranscriptional regulation of ERECTA receptor-like kinase expression
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Mechanisms of Gene RegulationWillet, Spencer; Wilson, Rebecca; Torii, Keiko; Shpak, Elena.receptor kinase
cell division
splicing
protein synthesis and turnover
89Potential of Pistia stratiotes L. for phytoremediation of atrazine-polluted waters: plant response to and uptake of atrazine
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Heavy Metals and PhytoremediationDel Campo, Claudia M.; Rubin, Baruch; Tel-Or, Elisha.Atrazine
Pistia
Phytoremediation
1697Potential regulatory mechanisms that control photosynthetic responses to developmental processes in Xanthium strumarium
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Environmental PhysiologyGordon, Elizabeth; Lewis, James; Tissue, David.Xanthium strumarium
source:sink relationships
nutrient supply
SPS
rubisco
Invertase
2286Potential Variability of Heat Tolerance for a Cool-season, Invasive Grass, Phalaris arundinacea
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Photosynthesis(Carbon)Zhiyu, He; Holaday, A. Scott.Phalaris arundinacea
Invasive Species
heat stress
Reed canary grass
1635Powdery mildew-induced changes in salicylic acid levels and related gene expression in grapevine
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Plant-Pathogen InteractionsSzabó, Zoltan; Li, Nan; Winterhagen, Patrick; Qiu, Wenping; Kovacs, Laszlo G..Grapevine
powdery mildew
salicylic acid
289Predicting PTS1/2-Targeted Matrix Proteins of Plant Peroxisomes from Genome Sequences
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Organelle BiologyReumann, Sigrun; Antonicelli, Esteban; Siemsen, Tanja; Lingner, Thomas; Morgenstern, Burkhard; Meinicke, Peter.bioinformatics
protein targeting
peroxisomes
pattern definition
368Preference and performance of Tetranychus urticae on horticultural species treated with methyl jasmonate
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Plant-Pest InteractionsRohwer, Charles; Erwin, John.twospotted spider mite
Tetranychus urticae
methyl jasmonate
bedding plants
258Production of Biologically Active Human IL-13 in Transgenic Plants for Oral Immunotherapy against Type 1 Diabetes
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Plant biotech & Risk AssessmentWang, David J; Ma, Shengwu.IL-13
Type 1 diabetes
transgenic
1056Production of Embryoids in the Tetraploid Selenicereus megalanthus (Vine Cacti) Using Anther and Ovule Culture Techniques
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Growth and Vegetative DevelopmentBenega Garcia, Reinerio; Tel-Zur, Noemi.embryoid
allohaploid
vine-cacti
in vitro
evolution
1244Production of the house dust mite major allergen Der p 1 in tobacco plants
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Plant biotech & Risk AssessmentBeuf, Laurent; Olagnier, Béatrice; Laparra, Hélène; Comeau, David; Peyrot, Corinne; Montandon, Frédéric; Desmaizières, Gregory; Duchateau, Nathalie; Decombas, Patrice; van Ree, Ronald; Moingeon, Philippe; Burtin, Daniel.Biotechnology
recombinant protein
allergen
460Profiling of copy specific expression patterns of a multicopy Myb gene of maize
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EpigeneticsWang, PoHao; Sekhon, Rajandeep; Chopra, Surinder.pericap color1 gene
1592Profiling of Tissue- and Stage-Specific Transcriptome with Rice 300K Microarray
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Large Scale Technologies and ResourcesKim, Min-Jeong; Chae, Songhwa; Kim, Yeon-Ki; Kim, Joung Sug; Jun, Kyong Mi; Pahk, Yoon Mok; Nahm, Baek Hie.rice
microarray
developemental stage
transcription factor
2303Protein-protein interaction of the immunophilin-like TWISTED DWARF1 with membrane transporters in Arabidopsis
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Membrane TransportHartwig, Thomas; Obrdlik, Petr; Frommer, Wolf-Bernd; Schulz, Burkhard.immunophilin
Auxin transport
twisted dwarf1
FKBP
246Protein-Protein interactions are involved in eugenol and isoeugenol biosynthesis in Petunia
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Secondary MetabolismKoeduka, Takao; Pichersky, Eran; Dudareva, Natalia; Qualley, Anthony.secondary metabolism
Petunia
eugenol
isoeugenol
protein-protein interaction
2256Protein Interaction at LTP Module in Arabidopsis thaliana During Bolting Transition
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Mechanisms of Gene RegulationBen-Ghaly, Labeed; Gamboa, Jeanne Dyan; Hsiung, Jamie; Reyes-Izquierdo, Tania; Vellanoweth, PhD, Robert L..lipid transfer protein
cis-regulatory element
lipid signaling
promoter
LTP
Luciferase
165Protein Mobilization in Germinating Mung Bean Seeds Involves Vacuolar Sorting Receptors and Multivesicular Bodies
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Protein Targeting and Vesicular TraffickingWang, Junqi; Li, Yubing; Lo, Sze Wan; Hillmer, Stefan; Sun, Samuel S. M.; Robinson, David; Jiang, Liwen.VSR
MVB
seed germination
300Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides and Compartmentalization of Unprecedented Metabolic Pathways and Defense Mechanisms
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Organelle BiologyReumann, Sigrun; Babujee, Lavanya; Ma, Changle; Wienkoop, Stephanie; Siemsen, Tanja; Antonicelli, Esteban; Rasche, Nicolas; Lueder, Franziska; Weckwerth, Wolfram; Jahn, Olaf.peroxisomes
beta-oxidation
photorespiration
defense
detoxification
proteomics
targeting prediction
510Proteome analysis of soybean developing seed coats
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Seed BiologyRomero, M Carmen; Brown, Daniel; Gijzen, Mark.seed coat
seed coat proteome
development
Soybean
legume seed coat
766Proteomic analysis of drought stress-responsive proteins in tomato
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Environmental PhysiologyKalampanayil, Bose; Wimmers, Larry; Bradley, Brian.proteomics
drought stress
915Proteomic analysis of the differential responses of elongation rate to water deficit within the soybean primary root growth zone
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Water RelationsYamaguchi, Mineo; Valliyodan, Babu; Zhang, Juan; LeNoble, Mary; Yu, Oliver; Nguyen, Henry; Sharp, Robert.water deficit
root tips
Soybean
proteomics
isoflavone
reactive oxygen species
ferritin
2229Proteomic Analysis of Ubiquitin-Protein Conjugates from Arabidopsis
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Protein Modification and TurnoverSaracco, Scott; Scalf, Mark A.; Hansson, Maria; Smith, Lloyd; Vierstra, Richard.ubiquitin
proteomics
mass spectrometry
protein degradation
Arabidopsis
2287Proteomic and genomic analyses reveal a substantial degree of post-transcriptional regulation in ethylene responses of Arabidopsis seedlings
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Hormone BiologyShakeel, Samina; Etheridge, Naomi; Schaller, G. Eric.
334Proteomic and Transcript Analysis of Grapevine Responses to Water Stress
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Emerging TechnologiesKatam, Ramesh; Vasanthaiah, Hemanth KN; Basha, Sheikh M; Frank, Matta.Grape
Water stress
proteomics
transcripts
2208Proteomic identification of safener-induced proteins in Triticum tauschii seedling tissues and functional analysis of safener-induced glutathione S-transferases in aneuploid wheat lines
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MetabolismZhang, Qin; Riechers, Dean.proteomics
safener
herbicide
jasmonic acid
wheat
glutathione S-transferase
1618Proteomics of the plant cell
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Organelle BiologyMasanek, Axel; Granvogl, Bernhard; Dotzler, Nora; Ploescher, Matthias; Eichacker, Lutz Andreas.proteomics
plant cell
organelles
membranes
native PAGE
mass spectrometry
OMX
355Proteomics of water-deficit stress in US peanut mini core accessions
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Environmental PhysiologyKottapalli, Kameswara Rao; Rakwal, Randeep; Burow, Gloria; Burke, John J; Puppala, Naveen; Payton, Paxton; Burow, Mark.protein markers
peanut mini core
Water stress
2386Purification and characterization of chitinase enzymes in edible mushrooms culture grown in different medium
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Education & OutreachVerma, Anshu.enzymes
Chitinase
mushrooms
media
purification
404Putative link between cytokinins and proline degradation and its potential involvement in plant response to drought stress
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Environmental PhysiologyDobra, Jana; Storchova, Helena; Havlova, Marie; Haisel, Daniel; Libus, Jiri; Vankova, Radomira.Cytokinin
proline dehydrogenase
abiotic stress
trans-zeatin O-glucosyltransferase
Drought
proline
tobacco
406Putrescine, spermidine, and spermine induced more resistance than cadaverine against abiotic stresses in Rice (Oryza sativa L.)
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Oxidative StressJang, Su Jin; Park, Ky Young; An, Gynheung.abiotic stress
H2O2
polyamine
rice
2506Putrescine overproduction changes the oxidative state of poplar cells in culture and aids in aluminum tolerance
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Oxidative StressMohapatra, Sridev; Minocha, Rakesh; Minocha, Subhash.polyamines
Putrescine
2535Pyruvate kinase-like HGCs control stress responsive seed germination in Thellungiella halophila and Arabidopsis thaliana
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SalinityZhan, Xiangqiang; Bressan, Ray A.; Hasegawa, Paul M..salinity
seed germination
ABA
sugar signaling
Thellungiella halophila
Arabidopsis thaliana
high germination capacity (HGC)
pyruvate kinase
750QTL Analysis of Fluxes in Developing Arabidopsis Embryos
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Seed BiologyCross, Joanna; Collakova, Eva; Gehan, Jackson; DellaPenna, Dean; Shachar-Hill, Yair.metabolic flux
seed development
Arabidopsis
1967Quantifying stomatal and non-stomatal limitation to carbon assimilation during succession in a sagebrush ecosystem
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Photosynthesis(Carbon)Naithani, Kusum; Ewers, Brent; Pendall, Elise.gas exchange
chlorophyll fluorescence
Artemisia tridentata var vaseyana
Lupinus argentus
Elymus smithii
809Quantitative analysis of anticancer 3-deoxyanthocyanidins in infected sorghum seedlings
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Secondary MetabolismLo, Clive; Shih, CH; Chu, IK.Sorghum 3-deoxyanthocyanidins
LC-SRM
208Quantitative imaging of lipid storage in the developing seed
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LipidsBorisjuk, Ljudmilla; Neuberger, Thomas; Srenivasulu, Nese; Wobus, Ulrich; Rolletschek, Hardy.TAG biosynthesis
seed development
gene expression
1492Rab5a plays a critical role in the transport of the rice glutelin to protein storage vacuole
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Protein Targeting and Vesicular TraffickingSatoh, mio; Masako, Fukuda; Nagamine, Ai; Washida, Haruhiko; Sugino, Aya; Ogawa, Masahiro; Satoh, Hikaru; Okita, Thomas W; Kumamaru, Toshihiro.rice
glutelin
Rab5a
protein body
mutants
endosperm
363RabA4b and its effector PI-4Kβ are key components for regulating secretory vesicle size in Arabidopsis
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Cell WallsKang, Byung-Ho; Preuss, Mary; Mastronarde, David; Cavalier, David; Staehelin, L. Andrew; Nielsen, Erik.Golgi
secretory vesicle
cell wall
polysaccharide
1638Radiation of the grape retroelement (GRET1) in Vitis spp. of the grapevine germplasm repository
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Genome EvolutionCadle-Davidson, Molly M.; Owens, Christopher L.retrotransposon
quantitative PCR
germplasm collection
Grapevine
341RALF, a secreted peptide involved in plant reproduction
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Cell-to-Cell and Long Distance SignalingChevalier, Eric; Matton, Daniel P..Rapid Alcalinization Factor
RALF
gene expression
1213Real-time autoradiography of labeled compounds in a living plant
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Mineral NutritionRai, Hiroki; Kanno, Satomi; Hayashi, Yoshitake; Ohya, Tomoyuki; Tanoi, Keitaro; Nakanishi, Tomoko.real-time autoradiography
CCD imaging system
radioisotope
autoradiography
1327Real-time imaging of inorganic phosphate movement in a soybean plant through a new system developed
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Mineral NutritionKanno, Satomi; Rai, Hiroki; Hayashi, Yoshitake; Tanoi, Keitaro; Nakanishi, Tomoko.real-time autoradiography
radioisotope
Phosphate
CCD imaging system
1513Receptor-like Kinases as Negative Regulators in Arabidopsis Innate Immunity
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Plant-Pathogen InteractionsStevenson, Lauren; Yang, Xin; Ramonell, Katrina.
1383Red Aleurone1 of Zea mays is required and independently regulated in phlobaphene and anthocyanin biosynthesis
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Secondary MetabolismSharma, Mandeep; Chopra, Surinder.maize
red aleurone1
flavonoids
transcriptional regulation
1683Redox homeostatis in plants: The Arabidopsis transcriptome in response to photosynthetic stress using high light and DCMU
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Integrative Plant PhysiologyKhandelwal, Abha; Elvitigala, Thanura; Zhou, Yiyong; Israelow, Ben; Ghosh, Bijoy; Quatrano, Ralph S..sensors
control network
metabolism
redox
microarray
high light
DCMU
motif
pathway
426Reduced Copper Tolerance and Accumulation in Metallothionein-Deficient Arabidopsis Mutants
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Heavy Metals and PhytoremediationBenatti, Matheus R.; Guo, Woei-Jiun; Meetam, Metha; Goldsbrough, Peter.Arabidopsis thaliana
Metallothionein
heavy metal
metal ion homeostasis
metal ion accumulation
oxidative stress
Cu sensitivity
1902Reduced PIMT activity detrimentally influences seed vigor
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Seed BiologyMajee, Susmita Maitra; Chen, Tingsu; Martin, David; Downie, Bruce.protein repair
373Regeneration of roots from callus reveals stability of the developmental program for determinate root growth in Sonoran Desert Cactaceae
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Growth and Vegetative DevelopmentShishkova, Svetlana; Moreno, Norma E.; Castillo-Díaz, Vicente; García-Mendoza, Edith; Arellano, Jesús; Dubrovsky, Joseph.root development
determinate root growth
Cactaceae
1571Regulating the expression of chloroplast translocon and ribosomal protein genes in Arabidopsis
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Mechanisms of Gene RegulationHuang, Yen-Chiao; Sun, Chih-Wen.
292Regulation of an insect-induced E-(beta)-ocimene synthase and other terpene synthases of Medicago truncatula
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Secondary MetabolismNavia-Gine, Wayra; Yuan, Joshua S.; Chen, Feng; Korth, Kenneth L..terpenoid
wound
441Regulation of carotenoid biosynthesis: Lessons from mutational analysis in tomato
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MetabolismHirschberg, Joseph; Galpaz, Navot; Kachanovsky, David; Ronin, Ira; Isaacson, Tal; Wang, Qiang.Carotenoid biosynthesis
metabolic regulation
tomato
Fruit development
1247Regulation of chloroplast fructose- 1,6 bisphosphate aldolase activity due to methylation of Lys-391 by Rubisco PsLSMT
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Protein Modification and TurnoverMagnani, Roberta; Dirk, Lynnette M.A.; Mazarei, Mitra; Houtz, Robert L..Aldolase
Rubisco Large Subunit Methyl Transferase
Activity
methylation
1095Regulation of expression of putative pectate lyase genes and analysis of pectate lyase activity in different tissues in Arabidopsis
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Cell WallsShin, Sung-Bong; Palusa, Saiprasad; Golovkin, Maxim; Richardson, Dale; Reddy, Anireddy S. N..Pectate Lyase
Pectin
Arabidopsis
278Regulation of mitogen activated protein kinases (MAPKs) and MAPK kinase (MAPKKs) in rice in response to various abiotic stresses
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Environmental PhysiologySinha, A.K.; Rao, K.P.; Kumar, K.; Sharma, P.; Adhikari, H..MAPK
MAPKK
rice
MAPK cascade
2632Regulation of organ boundaries during reproductive development in Arabidopsis
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Reproductive DevelopmentBhattacharya, Monideepa; Becerra, Benjamin Joseph; Smith, Harley.Organ boundary
LATERAL SUPPRESSOR
PENNYWISE
Inflorescence development
158Regulation of the methionine cycle in plants
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MetabolismBuerstenbinder, Katharina; Sauter, Margret.methionine cycle
sulfur metabolism
ethylene synthesis
S-adenosylmethionine
Arabidopsis thaliana
948Regulation of trichome socket cell fate and pattern formation
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Cell-to-Cell and Long Distance SignalingValdivia, Elene R.; Chevalier, David; Walker, John.trichome socket cells
Arabidopsis thaliana
Cell fate
Cell-cell communication
pattern formation
463Regulatory effects of ethylene and polyamines on the gene expression of antioxidative enzymes in response to oxidative stress with H2O2 treatment
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Oxidative StressWi, Soo Jin; Park, Ky Young.oxidative stress
ethylene
polyamines
antioxidative enzymes
131Regulatory Protein-Protein Interactions in Metabolism: The Case of Cysteine Biosynthesis
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MetabolismJez, Joseph M.; Kumaran, Sangaralingam; Francois, Julie A..cysteine
protein-protein interaction
x-ray crystallography
956
Canceled
Relation between Development and Splicing :Functional analysis of Arabidopsis thaliana PRP18 family, SLU7-2 family and PRP16 proteins potentially involved in second step of splicing
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Mechanisms of Gene RegulationAnnamalai, Devi.
2684Relation between Development and Splicing :Functional analysis of Arabidopsis thaliana PRP18 family, SLU7-2 family and PRP16 proteins potentially involved in second step of splicing 1Devi Annamalai1 and 2
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Mechanisms of Gene RegulationAnnamalai, Devi; Schuler, Mary A..PRP18 family
second step splcing factors in arabidopsis
PRP16
SLU7 family
443Relationship between stomatal closure, and xylem vulnerability to cavitation in poplars
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Water RelationsArango, Adriana; Zwiazek, Janusz; Thomas, Barb; Tyree, Mel.poplars
xylem vulnerability
stomatal conductance
turgor potential
784Reliable detection and identification of genetically modified cabbage by qualitative PCR analysis
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Plant biotech & Risk AssessmentLim, Sun-Hyung; Ho, Jung-Yoon; Woo, Hee-Jong; Lee, Si-Myung; Jin, Yong-Moon; Cho, Hyun-Suk.GM detection
1545Repairing assay system of chromosomal mutated GUS gene in rice for improving the condition of oligonucleotide-directed gene targeting in rice
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Plant biotech & Risk AssessmentToriyama, Kinya; Okuzaki, Ayako.Gene targeting
880Repression of anthocyan synthesis in Arabidopsis by three related, nitrate-induced transcription factors acting upstream of PAP1
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Mechanisms of Gene RegulationRubin, Grit; Dieterich, Jens-Holger; Stitt, Mark; Scheible, Wolf-Rüdiger.transcription factors
anthocyan synthesis
nitrate
PAP
2585Requirement of an ER-directed signal peptide for accumulation of active Trichoderma reesei cellobiohydrolase I in transgenic corn seed
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Bio-Energy CropsMiles, Stacy; Arellano, Sergio; Krebs, Heather; Nelson, Andrea; Batie, Chris; Betts, Scott.cellobiohydrolase
transgenic corn
cellulosic ethanol
subcellular targeting
854Requirement of the plastid ndh genes for photosynthetic land adaptation
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Photosynthesis(Light)Martin, Mercedes; Sabater, Bartolome; Serrot, Patricia; Pradanos, Carlos.chlororespiration
Plastid
2098Resistance of transgenic tall fescue to brown patch and gray leaf spot diseases
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Plant-Pathogen InteractionsDong, Shujie; Shew, David; Tredway, Lane; Lu, Jianli; Sivamani, Elumalai; Miller, Eric; Qu, Rongda.tall fescue
disease
Resistance
2290Response of the barley proteome to drought stress
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Water RelationsWalck, Aaron; Melmaiee, Kalpalatha; Abebe, Tilahun.barley
Drought
proteome
Spike
1277Response to Cadmium as a Potential Hydroponic Screening Tool for Zinc Efficiency in Common Bean
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Mineral NutritionHacisalihoglu, Gokhan; Vallejos, E.; Kochian, L..Zinc
Cadmium
bean
Zn deficiency
hydroponics
2104Retrotransposon-Based Molecular Marker Development for Apomixis in Pennisetum squamulatum
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Reproductive DevelopmentHuo, heqiang; Peggy, Ozias-Akins.apomixis
retrotransposon
S-SAP
molecular marker
Pennisetum Squamulatum
2206Ribosome association and GTP binding properties of pea and Arabidopsis DRG proteins
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Intracellular SignalingNelson, Benjamin.G-proteins
179Riboswitch mediated gene control in plants
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Mechanisms of Gene RegulationWachter, Andreas; Tunc-Ozdemir, Meral; Grove, Beth C.; Green, Pamela J.; Shintani, David K.; Breaker, Ronald R..riboswitch
aptamer
thiamine
3´ terminus processing
2027Rice APETALA2 in Stress- and Yield-related Traits
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Water RelationsOh, Se-Jun; Kwon, Chang-Woo; Kim, Youn Shic; Kim, Ju-Kon.APETALA2
abiotic stress
yield
Transgenic rice
microarray
ChIP-on-chip
1564Rice NACs in Stress- and Yield-Related Traits
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Water RelationsJeong, Jin Seo; Cheong, Pil-Joong; Baek, Kwang-Hun; Park, young Taik; Kim, Yeon-Ki; Kim, Ju-Kon.NAC
stress
yield
stress tolerance
1364RIN and NOR Function in Acquisition of Fruit Ripening Competency
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Mechanisms of Gene RegulationMartel, Catherine; Giovannoni, James J..Fruit
gene regulation
tomato
ripening
transcription factor
microarray
1443RNA decay: are mRNAs specifically targeted to 5’ vs. 3’ decay pathways?
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Mechanisms of Gene RegulationGoeres, David C.; Sieburth, Leslie E..RNA decay
mRNA decapping
trident
varicose
Arabidopsis
1512RNA Editing in the Chloroplast Genomes of Gymnosperms
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Genome EvolutionYu, Jianing; Raubeson, Linda A..RNA editing
chloroplast genome
gymnosperm
319Role of auxin and ethylene in adventitious root formation in Arabidopsis
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Hormone BiologySukumar, Poornima; Muday, Gloria K.Adventitious roots
Arabidopsis
auxin
ethylene
flavonoids
1111Role of glutathione and sulfhydryl groups for cadmium tolerance of Aspergillus niger B77
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Heavy Metals and PhytoremediationTodorova, Dessislava; Miteva, Lyuba; Ivanov, Sergei; Alexieva, V.; Tsekova, K..A. niger
Heavy Metals
glutathione
sulfhydryl groups
2720Role of glycerol-3-phosphate dehydrogenase in plant defense signaling
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Plant-Pathogen InteractionsMuse, Tom; Orlov, Lev; Lapchyk, Ludmila; Kachroo, Aardra; Kachroo, Pradeep.
1144Role of jasmonic acid in long-distance defense signaling
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Cell-to-Cell and Long Distance SignalingKoo, Abraham Jeong-Kyu; Howe, Gregg.jasmonic acid
Signaling
long-distance
dexamethasone
wounding
462Role of leaf aquaporins in responses of poplar trees to drought
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Water RelationsAlmeida-Rodriguez, Adriana; Cooke, Janice; Yeh, Francis; Zwiazek, Dr. Janusz.aquaporins
poplar
leaf hydrolic conductance
Drought
326Role of tocopherols in lipid metabolism and phloem loading during chilling adaptation in Arabidopsis
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Oxidative StressMaeda, Hiroshi; Sage, Tammy; DellaPenna, Dean.tocopherol
antioxidant
vitamin E
low temperature
membrane
phloem loading
1558Role of ZAT6 in Phosphate Stress Response
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Mineral NutritionBallachanda, Devaiah; Nagarajan, Vinay; Raghothama, Kashchandra G.zinc finger
phosphate starvation
phosphorus
root architecture
phosphatase
347Roles for Multiple Auxin Biosynthetic Pathways
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Hormone BiologyBarkawi, Lana; Gardner, Gary; Cohen, Jerry D..Auxin transport
Indole-3-acetic acid
Tryptophan
wounding
Anthranilate
583Roles of the first introns on the expression of Arabidopsis (Arabidopsis thaliana) genes for actin and actin-binding proteins
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Mechanisms of Gene RegulationJung, Eun-Jung; Jeong, Young-Min; Kim, Hoyeun; Lee, So-Young; Kim, Sang-Gu.actin
actin depolymerizing factor
profilin
intron mediated enhancement
GUS
intron
gene expression
991Root-secreted allelochemical in the noxious weed Phragmites australis deploys a reactive oxygen species response and microtubule assembly disruption to execute rhizotoxicity
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Environmental PhysiologyRudrappa, Thimmaraju; Justin, Bonsall; Gallagher, John L.; Seliskar, Denise M.; Harsh, Bais.Phragmites australis
root exudation
allelopathy
gallic acid
reactive oxygen species
microtubule
769Root Protein Expression Associated with Thermotolerance of Geothermal and Turf-type Agrostis Grass Species
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Temperature ResponsesXu, Yan; Tian, Jiang; Huang, Bingru.Thermotolerance
HSPs
137Root structure and ADH expression plasticity of aerial-aquatic plants in response to different water environment
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Environmental PhysiologyKordyum, E.; Kozeko, L.; Ovcharenko, Yu..Water relations
phenotypic plasticity
root development
alcohol dehydrogenase
764ROS Signaling is Fundamental to Chilling Stress in Arabidopsis
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Oxidative StressEinset, John.
282Salicylic acid is required for safener-induced expression of glutathione S-transferases in Arabidopsis
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Mechanisms of Gene RegulationEl Sherif, Nahla; Goldsbrough, Peter.GST
safeners
salicylic acid
phenyl alanine
glutathione S-transferases
1444Salinity-induced changes in cellular localizations of SKD1 and two SKD1-interacting proteins SNF1 and CPN1 in Mesembryanthemum crystallinum
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Protein Targeting and Vesicular TraffickingJou, YingTzy; Chen, Yu-Chan; Yen, Hungchen Emilie.plant cell biology
Mesembryanthemum crystallinum
2695Salinity effects on expression levels of NHX1, NHX4, H+-ATPase, and VPP1 during cell development in the maize leaf
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SalinityBernstein, Nirit.salinity
NHX
H+-ATPase
VPP1
leaf
280Salt-induced changes in the plasma membrane proteome of the halotolerant alga Dunaliella salina
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SalinityKatz, Adriana; Waridel, Patrice; Shevchenko, Andrej; Pick, Uri.membrane protein
proteomics
BN gel
salinity tolerance
plasma membrane
LC-MS/MS
574Salt stress reactions of a non-halophytic succulent plant
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SalinityBartha, Laszlo; Fodorpataki, Laszlo.antioxidants
salt stress
succulent non-halophyte
2203SAWFISH1 (SFS1) is a microtubule associated protein required for normal development in Arabidopsis.
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Cell WallsTrager, Evan; Kaplinsky, Nick.microtubule
CesA
planar phyllotaxy
498Scarecrow (SCR) Mediates Root Development in Lupinus albus and Medicago truncatula
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Growth and Vegetative DevelopmentSbabou, Laila; Podkowinski, Jan; hulshout, jeltie; Bucciarelli, Bruna; Miller, Sue; Allan, Deborah; Vance, Caroll.Lupinus albus
Medicago truncatula
Scarecrow TF
RNAi
root development
2471
Canceled
Screening Chrysothamnus nauseosus (Rabbit Brush) Populations for Variation in Rubber Content and Quality
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Secondary MetabolismHathwaik, Upul, I; Durant, Kacey; Villaluz, Evan; Harmon, Daniel; Young, James; Shintani, David, K.Rubber
Rabbit brush
1446Searching for new peroxins in Arabidopsis
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Organelle BiologyRay, Elizabeth A.; Bartel, Bonnie.
1333Secreted α-amylase from Arabidopsis: Expression in ABA and disease-resistance mutants, and biochemical properties
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Integrative Plant PhysiologyDoyle, Elizabeth A.; Marshall, B. Grant; O Neil, Anne D.; Schrader, Meg K.; Schroeder, S. Nick; Monroe, Jonathan D..alpha-amylase
Abscisic Acid
abiotic and biotic stresses
abi mutants
secreted
231Secretory Carrier Membrane Proteins (SCAMPs) in Arabidopsis thaliana
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Protein Targeting and Vesicular TraffickingRobertson, Amber L.; Rao, Hongyu; Wang, Wuyi; Patterson, Sara E..SCAMP
Abscission
secretory pathway
1314Seed Germination or Seed Hatching? Germination Behavior of Korean Bramble (Rubus coreanus Miquel) Seeds
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Seed BiologyRehman, Shafiq; Iqbal, Zafar; Ashraf, Muhammad; Yun, SongJoon.seed germination
Rubus coreanus
endospermic layer
ABA
GA
dormancy
1237Seed reserves characterization and utilization in tropical dry forest
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Seed BiologySoriano, Diana; Huante, Pilar.Seeds
reserves
tropical dry forest
2385SET- and RING-associated domain proteins bridge histone and DNA methylation
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EpigeneticsLiu, Shiming; Yu, Yu; Ruan, Ying; Xu, Lin; Wolff, Michel; Meyer, Denise; Shen, Wen-Hui.chromatin modification
methylation
epigenetics
histone
2449Shade-Resistant Arabidopsis thaliana with Bathochromic Phytochromes A
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PhotomorphogenesisHan, Yun-Jeong; Kim, Jeong-Il; Song, Pill-Soon.bathochromic
Phytochrome
2384Shoot branching and the MAX pathway in Arabidopsis
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Growth and Vegetative DevelopmentCrawford, Scott; Leyser, Ottoline.auxin
PINs
branching
MAX
161Shotgun proteomic analysis of insect feces: A novel approach to identify hyperstable plant defense proteins that impair insect digestive physiology
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Plant-Pest InteractionsGonzales-Vigil, Eliana; Chen, Hui; Howe, Gregg.threonine deaminase
plant-insect interaction
jasmonic acid
proteomics
tomato
527Silverleaf whiteflies induce salicylic acid defenses and suppress effectual jasmonic acid defenses
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Plant-Pest InteractionsKempema, Louisa; Zarate, Sonia; Walling, Linda.plant-insect interaction
salicylic acid
jasmonic acid
defense
defense mutants
whitefly
herbivore
GeneChip
1761Simple sequence repeat (SSR) assessment of genetic diversity of 23 cassava (Manihot esculenta Crantz) cultivars from Puerto Rico
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Plant biotech & Risk AssessmentCorrea, Ana Maria; Siritunga, Dimuth.Genetic diversity
SSR markers
Manihot esculenta
2455Small Molecule Perturbation of Auxin Responses in Arabidopsis thaliana
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Hormone BiologySungur, Can; Schultz, Erica; Miller, Sarah; Bergholtz, Johann; Brisbois, Ronald; Hoye, Becky; Overvoorde, Paul.auxin
chemical genetics
425SNP Discovery with HpaII-Filtered Genomic Libraries of Maize using Next-Generation Sequencing Technologies
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Emerging TechnologiesErsoz, Elhan; Gore, Michael; Hurwitz, Bonnie; Narechania, Apurva; Wright, Mark; Grills, George; Ware, Doreen; Buckler, Edward.SNP discovery
genome reduction
next-generation sequencing
HpaII
maize
Zea mays L.
855SnRK1 activity during phosphate deficiency in Arabidopsis thaliana
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Intracellular SignalingCoello, Patricia; Fragoso, Selene; Espíndola, Laura.Phosphate
SnRK1
830SOB3 and ESC are two plant-specific genes involved in seedling development
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PhotomorphogenesisSmith, Alison M.; Street, Ian; Shah, Purvi K.; Avery, Nathan; Neff, Michael M..Arabidopsis
hypocotyl
photomorphogenesis
growth
1348Solar-Terrestrial Effects on Bean Seed Imbibition
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RhythmsMInorsky, Peter V..rhythm
imbibition
solar-terrestrial
1413Spatial and temporal patterns in the floral transcriptome of the basal angiosperm, Persea americana (avocado): a glimpse of ancient whorls
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Evolution of Development and PhysiologyChanderbali, Andre; Altman, Naomi; Soltis, Douglas E.; Soltis, Pamela S..Persea
microarray
Floral development
gene expression
tepal
435Spatially Resolved Metabolomics and Proteomics of Medicago truncatula Border Cells and Root Tips
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Plant-Pathogen InteractionsWatson, Bonnie S.; Urbanczyk-Wochniak, Ewa; Lei, Zhentian; Bedair, Mohamed; Sumner, Lloyd W..Medicago truncatula
border cells
root tips
metabolomics
proteomics
455Spatio-temporal analysis of actin polymerization sites in living root hair cells responding to specific Nod factors.
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Plant-Symbiont InteractionsCardenas, Luis; Santana, O; Nava, Noreide; Quinto, Carmen.actin
Symbiosis
cytoskeleton
172Spatiotemporal regulation of three coordinately expressed poplar cellulose synthase genes involved in xylem development and tension wood formation
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Cell WallsJoshi, Chandrashekhar P.; Liu, Yunxia; Fujino, Takeshi; Thammannagowda, Shiv; Xu, Fuyu.Cellulose
poplar
CesA
promoter
tree
90Specific leaf area, leaf thickness and density of two range plant species influenced by long-term cattle grazing
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Environmental PhysiologyDong, Xuejun; Nyren, Paul; Patton, Bob; Kreft, Brian; Nyren, Anne.North Dakota
Prairie plants
Water relations
integrated physiology
Rangeland Management
1565Spectroscopic and mutagenesis studies of phytochromobilin synthase HY2 from Arabidopsis
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MetabolismKu, Li-Wen; Chen, Hsiu-Chen; Tu, Shih-Long.phytochromobilin
Phytochrome
chromophore
HY2
2541Sphingoid base composition of monoglucosylceramides in legumes
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LipidsNakai, Ayako; Imai, Hiroyuki.glucosylceramide
sphingolipid
Lotus japonicus
1371Spinach shows no cross protection between drought and UV-B stresses
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Oxidative StressHamner, Melissa; Shinkle, James.UVB stress
antioxidants
drought stress
2656Spinach SoHXK1 is a mitochondria-associated hexokinase
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MetabolismDamari-Weissler, Hila; Ginzburg, Alexandra; Krassovskaya, Inga; Weber, Andreas P.M.; Granot, David.Subcellular localization
Hexokinase
Hexose phosphorylation
GFP
869Stable Transformation of Ceratopteris richardii
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Growth and Vegetative DevelopmentNugent, Anna; Mohamed, Abeer; Short, Timothy.ferns
transformation
1831Starch degradation in the floral nectary provides sugars for nectar and substrates for antioxidant production
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MetabolismRen, Gang; Healy, Rosaria; Horner, Harry T.; James, Martha; Thornburg, Robert.nectary
starch degradation
beta-carotene synthesis
antioxidant
555STAYGREEN Regulates Chlorophyll Degradation by Interacting with Light-harvesting Chlorophyll-binding Protein during Leaf Senescence
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Mechanisms of Gene RegulationPark, So-Yon; Paek, Nam-Chon.leaf senescence 
Stay-green
protein degradation
2662Steps towards unraveling the regulation of nitrogen assimilation in the marine diatom Thalassiosira pseudonana: diurnal oscillations in mRNA levels encoding five key nitrogen-assimilating enzymes
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MetabolismBrown, Kathryn; Twing, Katrina; Robertson, Deborah.nitrogen and carbon metabolism
diatoms
401Stimulation of Cyclic Electron Flow around Photosystem I (CEF-PSI) by Overexpression of Ferredoxin in Transplastomic Tobacco enhances Non-Photochemical Quenching (NPQ) of Chlorophyll Fluorescence
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Photosynthesis(Light)Yamamoto, Hiroshi.cyclic electron transport
ferredoxin
npq
plastid transformation
141Stimulation of transit-peptide release and ATP hydrolysis by a cochaperone during protein import into chloroplasts
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Protein Targeting and Vesicular TraffickingChu, Chiung-chih; Chou, Ming-lun; Chen, Lih-jen; Akita, Mitsuru; Li, Hsou-min.chloroplast protein transport
cochaperone
AAA protein
ATPase activation
907STM interacts with a floral integrator protein to maintain inflorescence meristem identity
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Reproductive DevelopmentJunqueira, Ricardo; Kanrar, Siddhartha; Smith, Harley.Phase transition
floral specification
1480Stomatal sensitivities to changes in leaf water potential, CO2 concentration and light intensity, and drought tolerance of temperate deciduous tree species
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Environmental PhysiologyAasamaa, Krõõt; Sõber, Anu.stomatal conductance
stomatal sensitivity
deciduous trees
479Stress and developmental expression of cold shock domain proteins in rice
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Temperature ResponsesChaikam, Vijay; Karlson, Dale, T. cold shock domain
low temperature stress
rice
abiotic stress
1045Structural insight to the conserved surface binding motifs of isoflavone O-methyltransferase
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Secondary MetabolismLiu, Chang-Jun; Wang, Cheng; Yu, Xiao-Hong.isoflavone O-methyltransferase
Crystal structure
Medicago truncatula
1901Structure, expression, and duplication of genes encoding O-methyltransferases in apple (Malus × domestica Borkh.)
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Secondary MetabolismHan, Yuepeng; Gasic, Ksenija; Korban, Schuyler.gene duplication
phylogenetics
evolution
1005Structure and activity of phytochrome heterodimers in Arabidopsis
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PhotomorphogenesisSharrock, Bob; Clack, Ted; Liu, Peng.
2295Structure and functional analysis of NPH3 - a regulator of phototropism in Arabidopsis
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TropismsPedmale, Ullas; Liscum, Mannie.NPH3
Phot1
phototropism
Phosphorylation
Signaling
383Studies on the Effect of Priming Treatment on the Germination of Sesame (Sesamum indicum L.)
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Environmental PhysiologyCho, Sang-Kyun; Shim, Kang-Bo; Oh, Young-Jin; Lee, Sheong-Chun; Kim, Jung Gon.sesame
Priming
seed germination
2071Studying Mechanisms of Root System Development in Arabidopsis and Dicot Crops
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Growth and Vegetative DevelopmentRoycewicz, Peter; Malamy, Jocelyn.root development
1534Study of biochemical activities of BON1, BAP1, and BAP2 in regulating plant growth and defense response
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Plant-Pathogen InteractionsLi, Yongqing; Topp, Stephanie; Hua, Jian.BON1,BAP1 & 2
2081Subcellular localization of AtWBC19, an Arabidopsis ABC transporter conferring kanamycin resistance
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Membrane TransportAyalew, Mentewab; Kemp, Megan; Mishra, Shreela.ABC transporter
resistance gene
localization
membrane traffic
1773Subcellular Localization of Regulatory A Subunits of Arabidopsis Protein Phosphatase 2A
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Intracellular SignalingBlakeslee, Joshua; Zhou, H.W.; Heath, J.T.; DeLong, A..Protein Phosphatase 2A
rcn1
Subcellular localization
72Suberin Biosynthesis in Arabidopsis, a New Look
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Secondary MetabolismGeisler-Lee, Jane; Zhu, Mengxia.Suberin biosynthesis
Computational biology
Plant secondary metabolism
2298Suborganellar localization of carotenogenic enzymes
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MetabolismIkegami, Ayako; Inoue, Kentaro.carotenoid
Citrus
membrane
protein import
Plastid
1149Suppression Of Soybean Oleosin Results In Malformation And Aggregation Of Oil Bodies Into Organelle Complexes
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Organelle BiologySchmidt, Monica; Herman, Eliot.Oleosin RNAi
Soybean
2566Suppressors of pmp1/ad1 in Chlamydomonas reinhardtii
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Photosynthesis(Carbon)duanmu, deqiang; Spalding, Martin.Chlamydomonas
CCM; Ci transport system
559Survey of splicing variation and allele specific expression in natural accessions of Arabidopsis thaliana using SNP-tiling array
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Emerging TechnologiesZhang, Xu; Byrnes, Jake; Borevitz, Justin.SNP
tiling array
splicing
allele specific expression
27Sustained heat suppresses activation of the BA auxin-responsive promoter in cultured guard cell protoplasts of tree tobacco
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Temperature ResponsesDong, Malia; Bufford, Jennifer; Oono, Yutaka; Church, Kacy; Dau, Minh; Michels, Kara; Haughton, Michael; Tallman, Gary.heat stress
guard cell
cell culture
auxin
gene expression
2066Switchgrass transformation for reduced lignin, increased cellulose content and improved ethanol production
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Bio-Energy CropsDong, Shujie; Li, Laigeng; Cheng, Jay; Chiang, Vincent; Burns, Joe; Qu, Rongda.switchgrass
ethanol
transformation
lignin
Cellulose
1311Synergid Cell Death in Arabidopsis is Triggered Following Direct Interaction With the Pollen Tube
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Reproductive DevelopmentPalanivelu, Ravishankar; Drews, Gary.pollen tube
synergid
Programmed Cell Death
degeneration
female gametophyte
embryosac
guidance
154Synergistic Effects of Sequential treatment with Methyl Jasmonate, Salicylic Acid and Yeast Extract on Benzophenanthridine Alkaloid Accumulation and Protein Expression in Eschscholtzia californica suspension culture
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Secondary MetabolismCho, Hwa-Young; Son, Seok Young; Rhee, Hong Soon; Yoon, Sung-Yong H.; Lee-Parsons, Carolyn W.T.; Park, Jeong Jin; Park, Jong moon.benzophenanthridine alkaloids
methyl jasmonate
salicylic acid
yeast extract
371Systematic analysis of phosphoproteins regulated by abscisic acid
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Hormone BiologyHe, Huaqin; Li, Jiaxu.Abscisic Acid
Phosphorylation
573T-DNA and Transposon Mutagenesis of the Soybean Genome
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Large Scale Technologies and ResourcesMathieu, Melanie; Huang, Shaoxing; Zhang, Zhanyuan; Somers, David; Clemente, Tom; Wang, Kan; Nguyen, Henry; Stacey, Gary.reverse genetics
Soybean
PCR walking
Database
Flanking sequences
Mutant analysis
Transposons
126T-DNA insertional mutants displaying an albino cotyledon phenotype
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Organelle BiologyRuppel, Nicholas J.; Hangarter, Roger.seedling chloroplast
albino
522Targeting of PAPK1 Involves Association with Cytoskeleton and Vesicle-like Organelles
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Protein Targeting and Vesicular TraffickingBen-Nissan, Gili; Lee, Jung-Youn.plasmodesmata
PAPK1
Phosphorylation
protein targeting
microtubule
cell-cell signaling
1089Taxol Biosynthesis: Acyl and Aroyl Transferases
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Secondary MetabolismHampel, Daniela; Mau, Christopher J.D.; Croteau, Rodney B..taxol
biosynthesis
acyl/aroyl transferases
1200Temperature-sensitive allele of RSW4 links the putative plant separase to cell division and cell expansion in the root of Arabidopsis
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Growth and Vegetative DevelopmentWu, Shuang; Scheible, Wolf-Rüdiger; Baskin, Tobias.separase
cell division
cell expansion
root growth
microtubule
793Tertiary Structural and Functional Analyses Identify a Viroid RNA Motif that Mediates Vascular Entry
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Cell-to-Cell and Long Distance SignalingZhong, Xuehua; Tao, Xiaorong; Stombaugh, Jesse; Leontis, Neocles; Ding, Biao.tertiary structure
vascular entry
RNA motif
875TFIBA counteracts auxin function in flax
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Hormone BiologyZhao, Yingchun; Hasenstein, Karl.TFIBA
PCIB
anti-auxin
ethylene
root growth
2195The 5’UTR of a soybean GS1 gene (Gmglnβ1) plays a role in the regulation of its expression
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Mechanisms of Gene RegulationWilson, Olivia; Ortega, Jose Luis; Sengupta-Gopalan, Champa.Agro-infiltration
Glutamine synthetase
3'UTR
1542The Ambrosia Project:  Student Characterization of a cDNA Library Derived From Ragweed Pollen
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Education & OutreachRobinson, Dave L; Manning, Chad M; Blair, Kathryne J.; Lau, Joann M.Ragweed
pollen
Student research
Ambrosia
Allergenic
Anther
library
cDNA
Allergenicity
weeds
Metallothionein
auxin
aspartic endopeptidase
60S ribosomal protein
anther-specific protein
Auxin Response Factor
1833The analysis of vegetative dehydrin-like proteins in soybean
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Environmental PhysiologyYamasaki, Yuji; Randall, Stephen.dehydrin
2003The Ancestral Angiosperm: Steps toward a genetic and genomic understanding of the origin of flowering plants.
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Genome EvolutiondePamphilis, Claude W.; Altman, Naomi; Carlson, John; Clifton, Sandra; Goicoechea, Jose Luis; Kudrna, Dave; Landherr, Lena; Leebens-Mack, James H.; Ma, Hong; Soltis, Douglas E.; Soltis, Pamela S.; Wall, P. Kerr; Wing, Rod.Comparative Genomics
genome evolution
HIgh Information Content Fingerprinting
Physical Map
next-generation sequencing
829The anthocyanin-impaired-response-1 (air1) mutant of Arabidopsis thaliana alters accumulation of anthocyanins and flavonoids specifically in response to salt stress
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Environmental PhysiologyVan Oosten, Michael; Sharkhuu, Altanbadralt; Peer, Wendy Ann; Murphy, Angus S.; Hasegawa, Paul M.; Bressan, Ray A..anthocyanin
flavonoid
salt stress
322The Arabidopsis polyadenylation factor subunit CPSF30 is implicated in responses to oxidative stress
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Oxidative StressHunt, Arthur; Zhang, Jingxian; Addepalli, Balasubramanyam; Yun, Kil-Young; Artiushin, Irina; Rao, Suryadevara; Xu, Ruqiang; Li, Quinn; Falcone, Deane.polyadenylation
posttranscriptional control
oxidative stress
1440The Arabidopsis RPS6 disease resistance gene encodes a member of the TIR-NBS-LRR class of proteins
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Plant-Pathogen InteractionsKim, Sang-Hee; Saha, Dipanwita; Anyanwu, Nkemdi; Kwon, Soon Il; Gassmann, Walter.hopPsyA
avirulence gene
RPS6
resistance gene
TIR-NBS-LRR
2156The Arabidopsis SR protein splicing factor SR45 is required for normal development and environmental response
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Mechanisms of Gene RegulationZhang, Xiao-Ning; Edmonds, Jason; Mount, Steve.alternative splicing
SR proteins
Arabidopsis
348The Arabidopsis TrxG (ATX1) complex; Putative involvement of Myotubularin 1
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ChromatinNdamukong, Ivan; Al Abdallat, Ayed; Madhusoodhanan L., Sreedevi; Avramova, Zoya.epigenetics
trithorax
Signaling
TAP tag
2285The auxin, 2-4-dichlorophenoxyacetic acid, modulates the inhibitory effects of the integrin-binding peptide, RGD, in suspension cultures of Daucus carota.
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Cell-to-Cell and Long Distance SignalingWilliams, Emily; Bradley, Robert; Staves, Mark; Blackman, Sheila.integrin
somatic embryo
Daucus carota
auxin
1657The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis
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Environmental PhysiologyJung, Jinwook; Won, So-Yoon; Suh, Seok Cheol; Kim, HyeRan; Wing, Rod; Jeong, Yeonhwa; Hwang, Ingyu; Kim, Minkyun.ERF-type transcription factor
Hordeum vulgare root abundant factor
salt-stress tolerance
377"The Benefits of Being Short" - Impact of P-Glycoproteins for Auxin Transport in Monocotyledons
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Hormone BiologyKnoeller, Anne; Blakeslee, Joshua; Richards, Elizabeth; Peer, Wendy; Murphy, Angus.auxin
p-glycoprotein
Oryza sativa
Zea mays
1313The beta-glucosidase of Orobanche minor
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Plant-Pathogen InteractionsSasaki, Izumi; Tsukahara, Keita.endo beta 1,4 glucanases
RNAi
holoparasite
253The biosynthesis of phosphatidylcholine in pea leaves involves acyl-editing with newly synthesized and recycled acyl-chains
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LipidsBates, Philip; Ohlrogge, John; Pollard, Mike.Phosphatidylcholine
acyl editing
lipid remodeling
Lipids
eukaryotic lipids
lipid trafficing
phosphatidic acid
metabolic flux
2665The Calcium Sensor CBL10 Mediates Salt Tolerance by Regulating Ion Homeostasis in Arabidopsis
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SalinityKim, Beom-Gi; Waadt, Rainer; Cheong, Yong Hwa; Pandey, Girdhar K.; Dominguez-Solis, Jose R.; Schültke, Stefanie; Lee, Sung Chul; Kudla, Jörg; Luan, Sheng.salt stress
calcium signaling
Arabidopsis
Sodium sequestration
890The carboxyl-terminal domain phosphatase-like 2 is a regulator of the leaf auxin response in Arabidopsis thaliana
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Hormone BiologyKoiwa, Hisashi; Ueda, Akihiro; Vikram, Meenu; Li, Pinghua; Feng, Yue; Kim, Se Won; Kang, Chang Ho; Kang, Jae Sook; Yun, Dae Jin; Bahk, Jeong Dong; Lee, Sang Yeol; Fukuhara, Toshiyuki; Staswick, Paul E.; Pepper, Alan E..CTD phosphatase
auxin
transcriptional regulation
543The characterization of eve, a novel Medicago truncatula mutant affecting both nodulation and root and shoot architecture
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Plant-Symbiont InteractionsLloyd, Melanie.supernodulation
Medicago truncatula
2477The chloroplast-localized AtTerC gene product in Arabidopsis thaliana is required for the biogenesis of thylakoid membrane and for the chloroplast development
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Organelle BiologyKwon, KwangChul; Cho, Myeon Haeng.prothylakoid
thylakoid
Chloroplast
seedling lethal
269The circadian clock and light signaling converge on PIF4 and PIF5 to control rhythmic hypocotyl growth
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PhotomorphogenesisNozue, Kazunari; Harmer, Stacey, L; Covington, Michael, F; Duek, Paula; Lorrain, Séverine; Fankhauser, Christian; Maloof, Julin, N.clock
light
hypocotyl
rhythm
403The circadian clock regulates auxin signaling in an organ-specific manner
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RhythmsCovington, Michael, F; Harmer, Stacey, L.auxin
clock
circadian gating
gravitropism
hypocotyl elongation
rhythm
159The common nod genes are required for mature biofilm formation in Sinorhizobium meliloti
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Plant-Symbiont InteractionsFujishige, N.A.; Lum, M.R.; De Hoff, P.L.; Hirsch, Ann M..nodulation genes
biofilm
nitrogen fixation
97The Construction of a Molecular Imprinting Tool in the Investigation of the Plant Stress Response Hormone Abscisic Acid
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Hormone BiologyBaldwin, Patrick; Bauerle, William L..imprinting
Abscisic Acid
molecule recognition
1049The COP9 signalsome is involved in ACR4 receptor turnover
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Growth and Vegetative DevelopmentChettoor, Antony; Xueyuan, Cao; Becraft, Phil.CRINKLY4
COP9 SIGNALSOME
61The E3 ligase AtCHIP ubiquitylates FtsH1, a component of the chloroplast FtsH protease, and regulates protein degradation in chloroplasts
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Protein Modification and TurnoverShen, Guoxin; Adam, Zach; Zhang, Hong.AtCHIP E3 ligase
chloroplast proteases
protein degradation
protein quality control
ubiquitylation
402The Effect of Different Subcellular Targeting of Cryptochrome 1 on Blue Light Regulated Photomorphogenesis
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PhotomorphogenesisWu, Guosheng; Spalding, Edgar.Cryptochrome 1
photomorphogenesis
364The Effect of Extracellular ATPyS on the Growth of Medicago truncatula Pollen Tubes
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Reproductive DevelopmentHood, Nathan; Butterfield, Timothy; Reichler, Stuart; Roux, Stanley.Medicago truncatula
pollen
Tubes
SURF
ATP
2114The effect of increasing free methionine pools on the expression of the different genes in methionine metabolism in the leaves and nodules of alfalfa.
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Metabolic EngineeringBarrow, Matthew; Bagga, Suman; Sengupta-Gopalan, Champa.Methionine
cystathionine gamma-synthase
alfalfa
1828The effect of low red/far-red ratio on flowering
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Integrative Plant PhysiologyKim, Sang Yeol; Michaels, Scott D..flowering
low red/far-red
1881The effect of protein phosphatase inhibitor cantharidin on A. thaliana transcriptom
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Mechanisms of Gene RegulationBajsa, Joanna; Agarwal, Ameeta; Duke, Stephen O..protein phosphatase inhibitor
microarray
Arabidopsis thaliana
346The Effect of UV-B Irradiation on the Growth of Etiolated Arabidopsis Seedlings
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PhotomorphogenesisGardner, Gary; Lin, Chentao; Tobin, Elaine M.; Loehrer, Heather; Brinkman, Doug.UV-B
ultraviolet light
photomorphogenesis
Arabidopsis
growth inhibition
hypocotyl elongation
2550The effects of florivory on reproduction in Nemophila menziesii
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Plant-Pest InteractionsMcCall, Andrew.Florivory
Plant-insect
herbivory
pollination
2702The Effects of Salinity on Xylem Cavitation in 1-yr old Baldcypress (Taxodium distichum) Seedlings
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Water RelationsLambeth, Emily; Stiller, Volker.xylem vulnerability
salinity
bald cypress
Taxodium distichum
1863The effects of seed maturity on seed quality in Epidendrum tempense.
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Seed Biologyschwallier, Rachel; Blackman, Sheila.Orchidaceae
seed development
maturation
1263The Emerging Role of Phosphoinositides in Root Hair Development
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Protein Targeting and Vesicular TraffickingThole, Julie; Nielsen, Erik.root hair development
phosphoinositide
membrane trafficking
Rab GTPase
155The ETCHED1-orthologous AtZR1 protein is essential for plastid differentiation and plant development in Arabidopsis
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Organelle BiologyKluth, Jantjeline; Gebert, Marina; Kruse, Karoline; Melonek, Joanna; Krupinska, Karin; Wienand, Udo; Lorbiecke, René.chloroplast development
pleiotropic mutant
chloroplast transcription
microarray
1699The Evolutionary History of Nitrogenase as assessed by nifK
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Plant-Symbiont InteractionsHartmann, Linda; Barnum, S R.cyanobacteria
nitrogen fixation
2653The evolutionary origin of plant roots
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Evolution of Development and PhysiologyMoore, Richard C..evo-devo
root development
shoot development
phylogenetics
molecular evolution
1048The Evolution of Nitrogen Fixation in Nitrogen Fixing Cyanobacteria Using nifD
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Genome EvolutionMenke, S M; Henson, B J; Barnum, S R.nitrogen fixation
nifD
evolution
1673The evolution of papaya sex chromosomes
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Genome EvolutionZhang, Wenyun; Moore, Richard C..sex chromosomes
papaya
genome evolution
788The expression pattern of floral symmetry genes in relation to floral morphology in Conandron ramondioides (Gesneriaceae)
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Evolution of Development and PhysiologyWu, Chun-Hsien; Wang, Chun-Neng.cycloidea
floral symmetry
542The FtsZ2-binding region of ARC6 shares features with distantly-related FtsZ-binding proteins
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Organelle BiologyGlynn, Jonathan M.; Osteryoung, Katherine.Chloroplast
FtsZ
ARC6
2090The Functional Significance of Evolutionarily Distinct Forms of Ribosomal Protein S15a in Arabidopsis
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Organelle BiologySzick-Miranda, Kathleen; Abidayo, Stacey; Zanial, Ali; Zanial, Ammar.ribosome
ribosomal protein
protein synthesis
gene family
505The Function of Myo-Inositol Polyphosphate 5-Phosphatase Genes in Plants
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Intracellular SignalingAnanieva, Elitsa; Erickson, Les; Ely, Amanda; Robinson, Jamille; Burnette, Ryan; Gillaspy, Glenda E..Signal transduction
inositol
InsP3
second messenger
883The function of the Fork-head-associated domain in Arabidopsis thaliana
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Cell-to-Cell and Long Distance SignalingPursel, Sydney; Chevalier, David; Walker, John.FHA domain
Arabidopsis thaliana
DNA repair
761The GCR1, GPA1, PRN1, NF-Y signal transduction chain mediates both blue light and ABA responses in etiolated Arabidopsis
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Intracellular SignalingKaufman, Lon; Warpeha, K. M.; Upadhyay, S.; Yeh, J.; Adamiak, J.; Hawkins, S. I.; Lapik, Y. R.; Anderson, M.B..blue
transcription factor
hormonal
Leaf development
2590The glutathione-deficient mutant pad2-1 is more susceptible to the insect herbivore Spodoptera littoralis
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Plant-Pest InteractionsBodenhausen, Natacha; Schlaeppi, Klaus; Buchala, Antony; Mauch, Felix; Reymond, Philippe.glutathione
glucosinolate
plant-insect interaction
gene expression
insect pest resistance
1106The histone deacetylase OsHDAC1 negatively regulates OsNAC4 that controls root development
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Mechanisms of Gene RegulationChung, Pil-Joong; Kwon, Chang-Woo; Jeong, Min-Ho; Jeong, Jin Seo; Kim, Yeon-Ki; Nahm, Baek Hie; Kim, Ju-Kon.Histone deacetylase
HDAC inhibitor
OsNAC4
chromatin immunoprecipitation
263The H subunit of eukaryotic translation initiation factor 3 contributes to the efficient translation of mRNAs with upstream open reading frames
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Mechanisms of Gene RegulationKim, Byung-Hoon; Roy, Bijoyita; Cai, Xue; Vaughn, Justin; Zhou, Fujun; Kim, Tae-Houn; von Arnim, Albrecht.uAUG
uORF
5' UTR
eIF3h
translation
polysome
microarray
472The impact of increasing plasma membrane Phosphatidylinositol(4,5)Bisphosphate on phosphoinositide turnover and cellular metabolism
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Intracellular SignalingIm, Yang Ju; Perera, Imara; Brglez, Irena; Davis, Amanda J; Stevenson-Paulik, Jill; Phillippy, Brian; Johannes, Eva; Allen, Nina; Boss, Wendy.phosphoinositide signaling
393The influence of the growing conditions on the polar metabolite fingerprint of Chlamydomonas reinhardtii as determined by 1H-NMR
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MetabolismBestman, Hank D.; Mobach, Janina; Zee, Jenna; Booy, Amanda.metabolite fingerprint
Chlamydomonas
glyoxylate shunt
NMR
223The Kingdom- and Tissue-specific Anchorage of Plant RanGAP to the Nuclear Envelope Involves a Novel Family of Plant Nuclear Pore Associated Transmembrane Proteins
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Protein Targeting and Vesicular TraffickingXu, Xianfeng, Morgan; Meulia, Tea; Meier, Iris.Nuclear Envelope
Nuclear Pore
Ran GTPase
1479The LasR Quorum Sensing Receptor Recognizes the Vitamin Riboflavin and Its Derivative Lumichrome as well as the Cognate Acyl Homoserine Lactone Signal
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Cell-to-Cell and Long Distance SignalingRajamani, Sathish; Teplitski, Max; Robinson, Jayne B.; Gao, Mengsheng; Phillips, Donald A.; Bauer, Dietz.Quorum Sensing
N-acyl homoserine lactone
Lumichrome
Riboflavin
2670The lss supernodulation mutant in Medicago truncatula
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Plant-Symbiont InteractionsMukherjee, Arijit; Smith, Lucinda; Schnabel, Elise; Long, Sharon; Frugoli, Julia.nodulation
autoregulation of nodulation
lss
SUNN
2180The maize Detl1 gene is required for normal endosperm transfer cell development
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Reproductive DevelopmentBecraft, Philip W.; Hueros, Gregorio S..transfer cell
endosperm
tagging
high throughput
293The molecular identification and functional characterization of host proteins associated with Plum pox virus (PPV) infection
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Plant-Pathogen InteractionsHuang, Tyng-Shyan; Wang, Aiming.plant-virus interaction
protein-protein interaction
Gene Silencing
viral replication complex
Plum pox virus
virus interacting host factors
recessive resistance
RNA viruses
1157The Multinational Coordinated Arabidopsis thaliana Functional Genomics Project
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Education & OutreachFriesner, Joanna; Gasser, Charles.Arabidopsis thaliana
Functional genomics
multinational cooperation
Steering Committee
264The N-terminal acidic domain of atToc159 is responsible for forming distinct translocons in chloroplasts
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Protein Targeting and Vesicular TraffickingRounds, Caleb; Schnell, Danny.Chloroplast
protein import
1373The nature of the xylem-epidermis hydraulic connection in Tradescantia fluminensis (Vell. Conc.) leaves
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Water RelationsYe, Qing; Holbrook, Noel M.; Zwieniecki, Maciej A..aquaporins
leaf hydraulics
pressure probe
vein xylem
414The network of interactions of the geminivirus nuclear shuttle protein
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Plant-Pathogen InteractionsCarvalho, Claudine, M; Florentino, Lilian, H; Santos, Anésia, A; Rocha, Carolina, S; Zerbini, Francisco, M; Fontes, Elizabeth, P.B.NSP
protein-protein interaction
Geminivirus
2100The Oryza Map Alignment Project: A new resource for comparative genome studies within Oryza.
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Genome EvolutionWing, Rod; Kim, HyeRan; Goicoechea, Jose Luis; Hurwitz, Bonnie; Yu, Yeisoo; Nelson, Will; Kudrna, Dave; Zuccolo, Andrea; Ammiraju, Jetty; Luo, Meizhong; Collura, Kristi; Sanchez, Paul; Song, Xiang; Fan, Chuanzhu; Ma, Jianxin; San Miguel, Phillip; Ware, Doreen; Soderlund, Carol; Stein, Lincoln; Jackson, Scott.Omap
Oryza
wild rice
BAC libraries
Physical Map
416The PHD-finger is associated with chromatin-remodeling domains that function in growth and development in plants
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ChromatinWatkinson, Jonathan I.; Safaee, Natasha M.; Gillaspy, Glenda E..chromatin-remodeling
PHD-finger
flowering time
histone
phosphoinositide
156The pollen-specific protein kinase ZmPTI1a from maize co-localizes with callose deposition and facilitates a competitive advantage to the male gametophyte
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Reproductive DevelopmentLorbiecke, René; Pinto, Sheena; Kluth, Jantjeline; Pusunc, Susan; Buchert, Eva; Herrmann, Markus M.; Wienand, Udo.pollen
hypersensitive response
myristoylation
RNAi
protein kinase signaling
callose
343The Protein Phosphatase Type 2C Proteins, POL and PLL1 are Required for Multiple Asymmetric Cell Divisions During Plant Development
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Cell-to-Cell and Long Distance SignalingGagne, Jennifer M.; Song, Sang-Kee; Clark, Steven E..CLAVATA
meristem
POLTERGEIST
2129The RAD23 Family of Ubiquitin-Like Proteins Regulates Plant Development and Abscisic Acid Signaling in Arabidopsis thaliana
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Protein Modification and TurnoverFarmer, Lisa; Fu, Hongyong; Vierstra, Richard.ubiquitination
protein degradation
26S Proteasome
1063The rate of Photosynthesis remains relatively high at moderately high temperatures in Arabidopsis thaliana rca mutant expressing thermostable chimeric Rubisco Activase
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Photosynthesis(Carbon)Kumar, Anshuman; Li, Cishan; Portis, Archie, R.activase
Photosynthesis
Arabidopsis
high temperature
1766The RING-type Ubiquitin Ligase, NLA, Controls the Adaptability of Arabidopsis to Nitrogen Limitation
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Mineral NutritionPeng, Mingsheng; Hannam, Carol; Gu, Honglan; Bi, Yong-Mei; Rothstein, Steven J.nitrogen limitation
adaptability
Ubiquitin ligase NLA
243The Role in Disease Resistance and Mechanism of Action of XB10, a Putative WRKY-Family Transcription Factor that Interacts with the XA21 Rice Pathogen Recognition Receptor
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Plant-Pathogen InteractionsBartley, Laura; Peng, YIng; Jung, Kihong; Chern, Mawsheng; Dardick, Christopher; Ruan, Randy; Ronald, Pamela.rice
Signal transduction
bacterial defense
kinase
502The role of AKR2 in the biogenesis of some membrane proteins
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Protein Targeting and Vesicular TraffickingKuppu, Sundaram; Venkataramani, Sujatha; Zhang, Hong.AKR2
protein targeting
2283The role of ARR22 and two-component systems during Arabidopsis pod development
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Seed BiologyNaomab, Erold; Gatollin, Stefano; Alandete-Saez, Monica; Gonzalez-Carranza, Zinnia; Roberts, Jeremy.Arabidopsis
response regulators
seed development
Signalling
996The Role of ETR1 and ERS1 in Ethylene Signal Transduction
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Hormone BiologyHall, Brenda P.; Qu, Xiang; Gao, Zhiyong; Schaller, G. Eric.Ethylene receptors
Signal transduction
245The role of GTP in regulating protein import into chloroplasts
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Membrane TransportWang, Fei; Smith, Matthew; Agne, Birgit; Kessler, Felix; Schnell, Danny.chloroplast protein transport
GTPase
GTP regulation
310The role of oxidative stress during natural priming and germination in Dodonea viscosa (L.) Jacq.-Sapindaceae seeds
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Environmental PhysiologyReyna-Llorens, Ivan; Cruz-Ortega, Rocio; Orozco-Segovia, Alma.Natural Priming
oxidative stress
seed germination
2127The Role of Plant Ontology In Comparative Plant Genomics And Gene Discovery
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Large Scale Technologies and ResourcesTung, Chih-Wei; Jaiswal, Pankaj; Ilic, Katica; Pujar, Anuradha; Kellogg, Elizabeth; Zapata, Felipe; Stevens, Peter; Avraham, Shuly; Schaeffer, Mary; Vincent, Leszek; Sachs, Marty; Rhee, Seung; Ware, Doreen; Stein, Lincoln; McCouch, Susan.plant ontology
controlled vocabulary
plant ontology consortium
Gramene
TAIR
maizeGDB
Database
bioinformatics
2310The Role of Promoter Sequence Divergence in Nonadditive Gene Expression in Arabidopsis Allopolyploids
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Mechanisms of Gene RegulationAgarwal, Vikram; Ha, Misook; Chen, Z. Jeffrey.polyploidy
Arabidopsis
70The role of Tha4 oligomers as the protein conducting component for folded protein transport by the chloroplast twin arginine transport system
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Protein Targeting and Vesicular TraffickingDabney-Smith, Carole; Cline, Kenneth C..twin arginine transport
chloroplast protein transport
thylakoid membrane
cysteine scanning
Tha4
1249The role of the phototropin 1 LOV domains in the regulation of chloroplast movement and leaf position and of phytochrome regulation of chloroplast movement in Arabidopsis thaliana seedlings.
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PhotomorphogenesisHan, Insoeb; Briggs, Winslow R..phototropin
Phytochrome
LOV domain
Chloroplast movement
361The Role of the Transmitting Tract in Pollination and Interspecific Incompatibility in Nicotiana
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Reproductive DevelopmentEberle, Carrie; Gardner, Nicole; Smith, Alan.pollen tube
Style
Pistil
Speciation
1894The Role of Two Ubiquitin-Like Proteins in Arabidopsis Peroxisome Biogenesis and Function
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Organelle Biologykaur, Navneet; Fan, Jilian; Quan, Sheng; Hu, Jianping.peroxisomes
UBL/UBA proteins
PEX2
139The roles of the ATG12 conjugation pathway in autophagic nutrient recycling in Arabidopsis thaliana
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Protein Targeting and Vesicular TraffickingPhillips, Allison; Suttangkakul, Anongpat; Chung, Taijoon; Vierstra, Richard.autophagy
nitrogen/carbon starvation
protein degradation
391The Search for Horizontal Gene Transfer in a Kleptoplastic Sea Slug
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Plant-Symbiont InteractionsRumpho, Mary; Worful, Jared; Lee, Jungho; Kannan, Krishna; Soule, Kara; Tyler, Mary; Manhart, James.Elysia chlorotica
Vaucheria litorea
Symbiosis
kleptoplasty
chloroplast genome
horizontal gene transfer
phosphoribulokinase
psbO
mitochondrial genome
Photosynthesis
heterokont
576The SOL Genomics Network - a clade oriented database for the Solanaceae and related Asterids
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Modeling and Computational BiologyMueller, Lukas; Menda, Naama; Buels, Robert; Kreuter, Marty; Mills, Adri; Skwarecki, Beth; Carpita, Chris; Tanksley, Steve.Database
bioinformatics
Solanaceae
tomato genome
1388The sorghum transcription factor yellow seed 1 (y1) regulates biosynthesis of defense related compounds
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Secondary MetabolismIbraheem, Farag; Chopra, Surinder.Phytoalexins
Phlobaphene
yellow seed1
Transposons
3-deoxyanthocyanidins
814The stable inheritance and expression of cold shock protein gene introduced into tobacco chloroplast
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Plant biotech & Risk AssessmentLee, Kyeong-Ryeol; Kim, Myung-Sik; Lee, Ki-Jong; Park, In-Cheol; Lee, Seung-Beom; Kwon, Soon-Jong. cold shock domain
low temperature
tobacco
Arthrobacter
802The structure of chloroplast DNA molecules and the effects of light on the amount of DNA per plastid during chloroplast development in Medicago truncatula
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Organelle BiologyShaver, Jeffrey M.; Oldenburg, Delene J.; Bendich, Arnold J..chloroplast DNA
development
pulsed-field gel electrophoresis
DNA structure
277The study of coumarins production after elicitation in Angelica gigas suspension culture
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Secondary MetabolismSon, Seok Young; Rhee, Hong Soon; Cho, Hwa-Young; Park, Jeong Jin; Lee, Song Eun; Park, Jong moon.Elicitation
Angelica gigas
248The tobacco Ubiquitin-specific protease NtCDD1 positively regulates cell death during plant disease resistance
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Protein Modification and TurnoverEwan, Richard; Sadanandom, Ari.ubiquitination
deubiquitination
113The tobacco WLIM1 protein triggers the formation of actin bundles through its LIM domains
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Cytoskeleton Structure and DynamicsThomas, Clément; Moreau, Flora; Hoffmann, Céline; Gatti, Sabrina; Hofmann, Christina; Van Troys, Marleen; Ampe, Christophe; Steinmetz, André.actin
cytoskeleton
LIM domain
actin bundles
563The two AGPase subunits evolve at different rates in higher plants, yet they are equally sensitive to activity-altering amino acid changes when expressed in bacteria
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Genome EvolutionGeorgelis, Nikolaos; Braun, Ed L; Shaw, Janine R; Hannah, L Curtis.ADP glucose
synonymous
evolution rate
508The Use of Apogamy to Investigate the Alternation of Generations in Ceratopteris richardii
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Growth and Vegetative DevelopmentCordle, Angela R.; Irish, Erin; Chi-Lien, Cheng.alternation of generations
apogamy
Ceratopteris richardii
490The Use of Chloro-complexation to Enhance Cadmium Uptake within a Phytoextraction System
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Heavy Metals and PhytoremediationLópez-Chuken, Ulrico J; Young, Scott D.salinity
Cadmium
Phytoextraction
1573The use of protease inhibitors to induce resistance of plants to insect pests
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Plant-Pest InteractionsHanacek, Pavel; Svabova, Lenka; Horacek, Jiri; Reinohl, Vilem; Griga, Miroslav; Prochazka, Stanislav.Protease inhibitor
insect pest resistance
pea
2329The VPg of tobacco etch virus is the virulence determinant for recessive resistance gene pvr1 in Capsicum
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Plant-Pathogen InteractionsPerez, Kari; Kang, Byoung-Cheorl; Yeam, Inhwa; Jahn, Molly.recessive resistance
virulence determinant
Potyvirus
pepper
1608The WD40-repeat protein RAE1 is involved in mRNA export and cell proliferation control in higher plants
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Mechanisms of Gene RegulationLee, Jae-Yong; Pai, Hyun-sook.cell division
74The wheat Gpc-B1 QTL for grain protein, Zn, and Fe content is a transcription factor associated with senescence and mineral remobilization
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Integrative Plant PhysiologyDistelfeld, Assaf; Uauy, Cristobal; Fahima, Tzion; Blechl, Ann; Dubcovsky, Jorge.Gpc-B1
Fe
senescence
Zn
grain protein content
wild emmer wheat
transcription factor
602Three Arabidopsis PUF proteins may be involved in translational regulation of transcripts related to shoot apical meristem maintenance
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Mechanisms of Gene RegulationFrancischini, C.W.; Favaro, Elaine C.; Quaggio, Ronaldo B..Arabidopsis thaliana
PUF proteins
Translational Regulation
yeast three-hybrid system
1784Three MIKC*-type MADS-box genes redundantly regulate pollen function in Arabidopsis
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Reproductive DevelopmentAdamczyk, Benjamin J.; Fernandez, Donna E..pollen
transcription factor
MADS box
MIKC*
1670Tickling the plant phenylpropanoid pathway by overexpression of a novel rice Myb
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Metabolic EngineeringDocimo, T; Leone, Antonella; Mattana, M; Fumagalli, E; Dalpiaz, F; Consonni, R; De Tommasi, N; Coraggio, I; Monti, L.myb transcription factor
phenylpropanoids
metabolic engineering
tobacco
Arabidopsis
504Tie-dyed1 encodes a novel protein controlling carbohydrate accumulation in leaves
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Growth and Vegetative DevelopmentBraun, David; Ma, Yi; Baker, R. Frank; Slewinski, Tom.maize
leaf traits
tie-dyed1
clonal analysis
vasculature
Endomembrane
hyperaccumulate carbohydrates
sucrose transport
2703TILLING® for isoflavone-free soybean
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Secondary MetabolismFacciotti, Daniel; Goodstal, F. John; Manning, Colleen; McGuire, Cate; Slade, Ann; Cochran, Michael.TILLING
isoflavone
Soybean
2079Timing of Photoperiod Sensitivity for Time to Flowering in Arabidopsis thaliana Landsberg erecta as Revealed by Reciprocal Transfer Experiments - what genetic control models should be able to explain
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Environmental PhysiologyVillegas, Daniel; Alcalde, Jose A..photoperiod
sensitivity
Arabidopsis
reciprocal transfers
2710Tissue culture studies of Caralluma tuberculata: an endangered plant
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Hormone BiologyRehman, Riaz; zia, Muhammad; Chaudhary, Fayyaz.organogenesis
Caralluma tuberculata
callogenesis
2134TMV vector-based expression of a mucosal targeting hepatitis B vaccine in Nicotiana benthamiana leaf and its immunogenicity in mice
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Emerging TechnologiesLePore, Kate; Elkin, Galina; Thanavala, Yasmin; Mason, Hugh.vaccine
Biotechnology
Biacore
302Tocopherol recycling reaction in Arabidopsis thaliana
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Secondary MetabolismKobayashi, Naoko; DellaPenna, Dean.tocopherol
Tocopherol recycling system
1419Tocopherols modulate defense signaling by blocking the formation of nonenzymatic lipid peroxidation products during germination
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Secondary MetabolismSattler, Scott; DellaPenna, Dean.tocopherol
Lipid peroxidation
vitamin E
vte2
defense
238
Canceled
To Gibberellins and Beyond!
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Secondary MetabolismPeters, Reuben.terpenoid
gibberellins
biosynthesis
enzyme mechanism
438Tomato cathepsin D inhibitor; An in-built stabilizing agent for recombinant proteins in plant-based expression systems?
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Plant biotech & Risk AssessmentGoulet, Charles; Anguenot, Raphaël; Benchabane, Meriem; Michaud, Dominique.Protease inhibitor
Increased protein content
Plant biotechnology
375Tonneau 1 is essential for root organogenesis
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Cytoskeleton Structure and DynamicsPodkowinski, Jan; Vance, Carroll; Allan, Deborah; Liu, Junqi; Bucciarelli, Bruna; Miller, Sue; Hulshuot, Jeltie.Tonneau 1
TON1
root apical meristem
cluster root
organogenesis
Lupinus albus
RNAi
1669Tools for Assessing Auxin Involvement in Arbuscular Mycorrhiza
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Plant-Symbiont InteractionsCoenen, Catharina; Brazelton, Jessica N.; Hayden, Joshua; Restori, Katherine.arbuscular mycorrhiza
auxin
bioassay
Glomus intraradices
Arbuscular mycorrhization
Mycorrhizae
2105Topology of Two Golgi-Membrane Glycan Synthases
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Cell WallsDavis, Jonthan; Liepman, Aaron H.; Keegstra, Kenneth.hemicellulose
glucomannan
xyloglucan
2624Toward a model curriculum for plant biology doctoral candidates in research ethics
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Education & OutreachRosenfeld, Kristen; Jordan, Chad; Patterson, Sara E.; Wentworth, Thomas; Sipes, Brent; Comstock, Gary.ethics
graduate school
plant science education
responsible conduct of research
1984Toward identifying EBO genes involved in BON1-mediated defense responses
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Plant-Pathogen InteractionsYang, Huijun; Topp, Stephanie; Hua, Jian.Plant
defense
temperature response
temperature
1242Towards the Identification of Common Bacterial Blight Resistance Genes in Phaseolus vulgaris
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Plant-Pathogen InteractionsPerry, Greg; Reinprecht, Yarmilla; Chan, John; Pauls, K. Peter.Bacterial Blight
Xanthomonas axonopodis
Phaseolus vulgaris
BiBAC
Resistance
198Towards Understanding Artemisinin Metabolism in Artemisia annua L.
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Secondary MetabolismWang, Wei; Qi, Yan; Yu, Puiman; Guo, Dianjing.Artemisinin biosynthetic pathway
Isoprenoid
cDNA-AFLP
LC-MS/GC-MS
Hairy roots
186Towards understanding targeting mechanisms of chloroplastic β-barrel membrane proteins
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Protein Targeting and Vesicular TraffickingHsu, Shih-Chi; Inoue, Kentaro.chloroplast protein transport
outer envelope protein
beta-barrel membrane protein
481Toward understanding plant peroxisome proliferation
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Organelle BiologyZhang, Xinchun; Orth, Travis; Reumann, Sigrun; Fan, Jilian; Wenzel, Dirk; Quan, Sheng; Aung, Kyaw; Hu, Jianping.peroxisome division and proliferation
PEX11
dynamin-related proteins (DRPs)
15Toward zinc finger nucleases-mediated gene targeting in plants
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Emerging TechnologiesTovkach, Andriy; Zeevi, Vardit; Tzfira, Tzvi.Gene targeting
zinc finger nucleases
DNA repair
1800Trafficking and degradation of recombinant IL-10 in plants
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Protein Targeting and Vesicular TraffickingKaldis, Angelo; Menassa, Rima.trafficking
recombinant protein
Subcellular localization
152Transcript and Metabolite Changes in Carbon and Nitrogen Allocation Pathways in Wheat under Drought
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Temperature ResponsesLee, Tamara; Poroyko, Valeriy; Bohnert, Hans.Drought resistance
transcripts
metabolites
nitrogen and carbon metabolism
wheat
enzymes
osmotic potential
Water stress
541Transcriptional Control of Embryo Development by LEAFY COTYLEDON1
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Seed BiologyPark, Soomin; Pelletier, Julie; Braybrook, Siobhan A.; Kwong, Raymond W.; Fischer, Robert L.; Goldberg, Robert B.; Harada, John J..seed development
embryogenesis
CCAAT-binding transcription factor
LEC
1408Transcriptional profiling in response to inhibition of cellulose synthesis
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Cell WallsDuval, Isabelle; Moneva, Evguenia; Beaudoin, Nathalie.Cellulose
Programmed Cell Death
thaxtomin A
1892Transcriptional Profiling of Arabidopsis Root Hairs and Pollen Defines an Apical Growth Signature
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Growth and Vegetative DevelopmentBecker, Jörg D; Takeda, Seiji; Dolan, Liam; Feijó, José A.Apical Growth
pollen
root hair
transcriptome
GeneChip
120Transcriptional profiling of hexaploid wheat (Triticum aestivum L.) roots identifies novel, dehydration-responsive genes
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Water RelationsMohammadi, Mohsen; Kav, Nat N. V.; Deyholos, Michael K..dehydration
microarray
wheat
genomics
crop
roots
Opata
Drought
osmotic
qRT-PCR
1825Transcription and Evolutionary Dynamics of the Centromeric Satellite Repeats CentO in Rice
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ChromatinLee, Hye-Ran; Neumann, Pavel; Macas, Jiri; Jiang, Jiming.Transcription
Centromere
satellite repeat
siRNA
chromatin immunoprecipitation
1351Transcription factors for metabolic engineering of health- and environmentally-beneficial proanthocyanidins in legumes
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Metabolic EngineeringPeel, Gregory; Dixon, R. A.; Pang, Yongzhen.metabolic engineering
Proanthocyanidins
Medicago truncatula
transcription factor
2312Transcriptome and Proteome Changes of Brassinsoteroid biosynthetic gene and Down-stream Proteins under Chilling Condition in Mung Bean Seedlings
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Temperature ResponsesHunag, Bin; Chen, Yih-Ming; Chen, Shu-Ling. low temperature stress
gene expression level
biotic stress
483Transcriptomic and Metabolomic Analysis of Antisense ATP-Citrate Lyase Arabidopsis thaliana Supplemented with Malonic Acid
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MetabolismBabka, Heather L; Fatland-Bloom, Beth L; Choi, Suh-Yeon; Nikolau, Basil J; Wurtele, Eve.Acetyl-CoA
ATP-Citrate Lyase
malonic acid
ACL
534Transcriptomic and Metabolomic analysis of PHB-producing Arabidopsis
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MetabolismChoi, Suh-Yeon; Ilarslan, Hilal; Kourtz, Lauralynn; Snell, Kristi; Lawrence, Michael; Cook, Dianne; Nikolau, Basil J; Wurtele, Eve.polyhydroxybutyrate
bioplastics
Acetyl-CoA
metabolomics
210Transcriptomic profiling of S. chacoense fertilization and embryogenesis
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Reproductive DevelopmentTebbji, Faiza; Nantel, André; Matton, Daniel P.Embryo development
Profiling
Signal transduction
1203Transformation of a dwarf Arabidopsis mutant illustrates gibberellin hormone physiology and the function of a Green Revolution gene
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Education & OutreachMolina, Isabel; Weber, Katrin; Ohlrogge, John.gibberellins
dwarf mutants
Agrobacterium tumefaciens
Plant transformation
1294Transformation Systems of Canola Using Anthranilate Syntheses Gene ASA2 as a Selectable Marker
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Plant biotech & Risk AssessmentJenkin, Jody; Dang, Benyuan; Gintz, Rebecca; Tsai, Fei-Yi; Chen, Zhizheng.Canola
2683Transgenic alfalfa (Medicago sativa L.) expressing spider silk protein: A value addition to the “Queen of forages”
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Plant biotech & Risk Assessmentkariyat ramachandran, rupesh ram; steinkraus, holly; groose, robin waldo; lewis, randolph.alfalfa
spider silk
transgenic
MaSp 1
F1 progeny
739Transgenic CBF1 tomato plants manifest enhanced tolerance to Ralstonia solanacearum via activation of LeERFs and pathogenesis-related (PR) genes
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Mechanisms of Gene RegulationLi, Chia-Wen; You, Su-Juan; Sanjaya, Sanjaya; Chan, Ming-Tsair.CBF1
Ralstonia solanacearum
ethylene response factor
Pathogenesis-related proteins
469Transgenic lectin rice plants showing resistance to rice tungro disease
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Plant-Pest InteractionsDas, Sampa; Saha, Prasenjit; Dasgupta, Indranil.Transgenic rice
Rice tungro disease
Insecticidal lectin
1103Transgenic Overexpression of Arabidopsis JASMONIC ACID CARBOXYL METHYL TRANSFERASE Alters Spikelet Development of Rice
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Hormone BiologyKim, Eun Hye; Kim, Youn Shic; Koo, Yeon Jong; Park, Su-Hyun; Nahm, Baek Hie; Song, Sang Ik; Choi, Yang Do; Cheong, Jong-Joo; Chung, Yong-Yoon; Kim, Ju-Kon.Transgenic rice
methyljasmonic acid
jasmonic acid
spikelet development
1624Transgenic Plants Overexpressing Arabidopsis Zeaxanthin Epoxidase Promote Osmotic-Stress Tolerance
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Oxidative StressSeok, Hye-Yeon; Park, Hee-Yeon; Woo, Dong-Hyouk; Lee, Choon-Hwan; Moon, Yong-Hwan.Zeaxanthin epoxidase 
abiotic stress
stress tolerance
153Transgenic soybean with enhanced tolerance to abiotic stress in the cotyledonary node method
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Plant biotech & Risk AssessmentKim, Young Jin; Park, Tae Il; Seo, Hong Yul; Kim, Jung Gon.Soybean
transformation
cotyledonary node
NDPK2
abiotic and biotic stresses
408Translational regulation of the plant S-adenosylmethionine decarboxylase by a sequence-dependent upstream open reading frame by phosphorylation
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Mechanisms of Gene RegulationChoi, Yu Jin; Park, Ky Young.S-adenosylmethionine decarboxylase
Upstream open reading frame
gene regulation
Phosphorylation
332Transpiration Rate Regulates Expression of Carbohydrate-associated Genes in Guard Cells
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Integrative Plant PhysiologySherdan, Danielle M.; Outlaw, William H..humidity
Photosynthesis
stomata
Transpiration
sucrose
1380Transplantation of the Rubisco large subunit from the C4 plant Amaranthus edulis into the chloroplasts of tobacco
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Photosynthesis(Carbon)Pike, Carl; Sharwood, Robert; Whitney, Spencer.
1843Transporters for di- and tripeptides in Arabidopsis
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Membrane TransportBrinkmann, Christopher; Komarova, Nataliya; Thor, Kathrin; Dietrich, Daniela; Suter-Grotemeyer, Marianne; Rentsch, Doris.Arabidopsis
peptide transport
peptides
nitrogen reallocation
tonoplast transporter
2361Transposon-mediated Gene Search in Barley
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Large Scale Technologies and ResourcesSingh, Jaswinder; Vutien, Philip; Blosse, Pierre-Alain; Gong, Alice; Sandhu, Harjot; Shafir, Adi; Sotelo-Troha, Katia; Lemaux, Peggy G..
1250
Canceled
Turgor pressure may mediate two negative growth responses of the sporangiophores of Phycomyces blakesleeanus
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Environmental PhysiologyOrtega, Joseph K.E.; Ortega, Elena L.; Scott, Morgan A..sensory responses
Phycomyces blakesleeanus
wind growth response
cell growth regulation
123Two cell wall proteins are specifically targeted to the modified cell wall surrounding the stomatal pore in A. thaliana
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Cell WallsCarter, Jamie; Tierney, Mary.cell wall
stomata
Proline-rich protein
localization
340Two CHS-interacting proteins, CyAP and ENTH-like, manipulate flavonoid production in response to auxin
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Secondary MetabolismWatkinson, Jonathan I.; Winkel, Brenda S. J..auxin
aminopeptidase
vesicular-transport
flavonol
roots
gravitropism
2686Two leucine rich repeat receptor-like kinases have roles in Arabidopsis embryonic and postembryonic development
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Growth and Vegetative DevelopmentRacolta, Adriana; Davies, Kelli; Tax, Frans.LRR-RLK
339Two members of the AtCBP60 protein family are required for Arabidopsis defense responses against Pseudomonas syringae
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Plant-Pathogen InteractionsWang, Lin; Glazebrook, Jane.bacterial defense
Pseudomonas syringae
218Two membrane-bound bZIP transcription factors of Arabidopsis are activated in response to ER stress
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Intracellular SignalingLiu, Jianxiang; Srivastava, Renu; Che, Ping; Howell, S.H.ER stress
bZIP transcription factors
AtS1P
Arabidopsis
599Two mitogen-activated protein kinase signaling cascades mediate basal resistance to antifungal plant defensins in Fusarium graminearum
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Plant-Pathogen InteractionsVellaisamy, Ramamoorthy; Zhao, Xinhua; Snyder, Anita; Xu, Jin-Rong; Shah, Dilip.plant pathology
wheat head blight
MAP kinases
plant defensins
471Two nearly identical terpene synthases catalyze the formation of nerolidol and linalool in snapdragon flowers
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Secondary MetabolismNagegowda, Dinesh A.; Dudareva, Natalia.terpenoid
309Two new regulators reveal tissue-specific rules for stomatal patterning
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Growth and Vegetative DevelopmentAbrash, Emily; Bergmann, Dominique.stomata
guard cell
development
differentiation
epidermis
patterning
484Two putative Poly (ADP-ribose) polymerases, RCD1 and SRO1, play important, partially redundant roles in Arabidopsis development
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Growth and Vegetative DevelopmentTeotia, Sachin; Rebecca, Lamb.RCD1-SRO1
539Two Small Regulatory RNAs Establish Opposing Fates of a Developmental Axis
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Non-Coding RNAsNogueira, Fabio TS; Madi, Shaminez; Chitwood, Daniel H; Timmermans, Marja CP.microRNA
trans-acting siRNA
patterning
maize
polarity
2553Two structural variants of the CONSTANS-LIKE gene in long- and short-day Solanum plants
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Reproductive DevelopmentDrobyazina, Polina E.; Khavkin, Emil E..photoperiodic flowering pathway
floral transition
CONSTANS genes
diurnal expression rhythm 
2241Understanding of the Functional Domains of Plant bHLH Transcription Factors
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Metabolic EngineeringKong, Que; Pattanaik, Sitakanta; Xie, Claire H.; Naik, Soumendra K.; Yuan, Ling.Plant transcription factors
bHLH transcription factor
Directed evolution
189
Canceled
Understanding the 'gears of signaling cascade' operative under salinity stress in Brassica contrasting genotypes
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Environmental PhysiologyPurty, Ram; Kumar, Gautam; Singla-Pareek, Sneh; Pareek, Ashwani.salinity
Brassica
transcriptional regulation
contrasting genotypes
2188Understanding the function and regulatory mechanism of sucrose phosphate synthase in alfalfa nodules
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Mechanisms of Gene RegulationMartinez, Martha; Ortega, Jose Luis; Aleman, Lorenzo; Sengupta-Gopalan, Champa.SPS
alfalfa
nodules
828
Canceled
Understanding the role of DORNRÖSCHEN-LIKE in Arabidopsis flower development
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Reproductive DevelopmentNag, Anwesha; Yang, Yingzhen; Jack, Thomas.reproductive development
Stamen
AP2
Anther
Arabidopsis
509Unexpected post-translational maturation of a human serpin, alpha-1-antichymotrypsin, expressed in a plant cell-based biofactory
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Plant biotech & Risk AssessmentBenchabane, Meriem; Gomord, Véronique; Saint-Jore Dupas, Claude; Faye, Loïc; Michaud, Dominique.Molecular farming
recombinant protein production
protein post-translational modification
glycosylation
protein degradation
serpin
400Unique functional specialization of individual subunits of the RNA-processing exosome complex in Arabidopsis
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Mechanisms of Gene RegulationChekanova, Julia; Gregory, Brian D.; Hooker, Tanya S.; Kumar, Ravi; Chen, Huaming; Yazaki, Junshi; Alonso, Jose M.; Brukhin, Vladimir; Grossniklaus, Ueli; Ecker, Joseph R.; Belostotsky, Dmitry.exosome
RNA processing
RNA degradation
RNA quality control
posttranscriptional control
1024Usage of Plants in Teaching Biological Principles in Secondary School Education
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Education & OutreachO'Brien, Terry; Egner, Tammy.education
New Jersey
1084Use of Affymetrix poplar whole genome arrays for global transcriptome analysis of tension wood formation in aspen trees
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Cell WallsThammannagowda, Shiv; Fei, Zhangjun; Crasta, Oswald; Joshi, Chandrashekhar P..Tension wood
Cellulose
Affymetrix
Populus
1783Use of a Yellow Cameleon (YC 3.60) as an intracellular calcium sensor in plant cells using fluorescence resonance energy transfer (FRET) sensitized emission
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Intracellular SignalingRincon-Zachary, Magaly; Valster, Aline; Blancaflor, Elison B.calcium signaling
sensitized emission FRET
cameleon
357Use of peptide aptamers for broad-based geminivirus disease resistance
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Emerging TechnologiesLopez-Ochoa, Luisa; Hanley-Bowdoin, Linda.Geminivirus Resistance
broad based resistance
peptide aptamers
66Use of Populus trichocarpa as a model species for hydrocarbon emission
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Secondary MetabolismWiberley, Amy E.; Donohue, Autumn R.; Sharkey, Thomas D..isoprene
methylerythritol 4-phosphate
dimethylallyl diphosphate
metabolic regulation
26Use of The Soybean Genome Database (SoyGD) For Whole Genome Annotation:
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Genome EvolutionJayaraman, Dheepakkumaran; Shultz, Jeffry L.; Lightfoot, David A..Soybean
Genomes
polyploid
repeat-motifs
evolution
biofuel-crop
517Using A Freshman Composition Course to Introduce Students to the Future of Food
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Education & OutreachMorin, Xenia K..
2633Using disruption of a resident gene as the primary step in screening for transformation of Chlamydomonas monoica with foreign DNA
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Plant biotech & Risk AssessmentMcBride, Timothy; Fuentes, Cesar; VanWinkle-Swift, Karen.Chlamydomonas monoica
transformation
aphVIII
1993Using dynamic modelling to illustrate the link between labelled carbon distribution and flux rates in a metabolic network
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Education & OutreachMobach, Janina; Bestman, Hank D..modelling
isotopomer
metabolic flux
2669Using next-generation sequencing to speed non-model organism genomics
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Emerging TechnologiesVarala, Kranthi; Swaminathan, Kankshita; Gene, Robinson; Amy, Toth; Hudson, Matthew.next-generation sequencing
genomics
bioinformatics
350Using systems biology to understand peroxisomal proteomes in Arabidopsis
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Organelle BiologyYang, Pingfang; Reumann, Sigrun; Shrestha, Kalpana; Kyaw, Aung; Olsen, Laura; Weber, Andreas; Hu, Jianping.peroxisomal proteome
proteomics
subcellular targeting
reverse genetics
Arabidopsis
1692Using tunable diode laser spectroscopy to determine carbon isotope discrimination and internal CO2 conductance in field-grown juniper
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Environmental PhysiologyBickford, Christopher P.; McDowell, Nate; Powers, Heath; Brown, Karen; Hanson, David T..stable isotope
carbon isotope discrimination
internal conductance
mesophyll conductance
Juniperus
188Utilization of defense-dependent dwarfism of acd6-1 in a high throughput identification of novel defense genes in Arabidopsis
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Plant-Pathogen InteractionsLu, Hua; Gamelin, Emily; Salimian, Sasan; Ferrari, Susan; Greenberg, Jean.defense
Pseudomonas
Signaling
suppressor screen
203Utilizing QTL investigation to identify novel alleles affecting the tocopherol pathway in plants
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Secondary MetabolismGilliland, Laura UIlrich; Supplee, Andrea; Magallanes-Lundback, Maria; DellaPenna, Dean.QTL
biofortification
phenylpropanoid metabolism
tocopherol
quantitative trait loci
vitamin E
seed metabolism
1737Utilizing SAG12-kn1 Petunias to Investigate Possible Application of kn1 to Delay Flower Senescence
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Hormone BiologyChang, Hsiang; Chai, Yu-Chin; Clark, David G..SAG12-kn1
senescence
Petunia
450UV-B Signalling Pathways in Arabidopsis: UVR8 Defines a Photomorphogenic Pathway that Regulates Transcription
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PhotomorphogenesisBrown, Bobby A.; Cloix, Catherine; Headland, Lauren R.; Herzyk, Pawel; Kaiserli, Eirini; Jenkins, Gareth I..photomorphogenesis
ultraviolet-B radiation
UV RESISTANCE LOCUS 8
1606Vacuolar-Sorting Mutants (green-fluorescent seed) Can Be Efficiently Identified by Secretion of Vacuole-Targeted GFP in Their Seeds of Arabidopsis
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Protein Targeting and Vesicular TraffickingFuji, Kentaro; Shimada, Tomoo; Takahashi, Hideyuki; Tamura, Kentaro; Koumoto, Yasuko; Nishizawa, Keito; Maruyama, Nobuyuki; Utsumi, Shigeru; Hara-Nishimura, Ikuko.Arabidopsis
Protein storage vacuole
seed storage protein
Mutant Screening
vacuolar protein sorting
vesicle
2000Variations in gene expression across homeologous regions of a triplicated region of the genome in different morphotypes of Brassica oleracea
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Genome EvolutionUnderwood, Beverly; Iniguez-Luy, Federico L.; Wu, Hank; Federico, Maria L.; Pires, J. Chris; Osborn, Thomas C.; Town, Christopher.polyploidy
subfunctionalization
2305Video podCasts as a mean to teach Plant Physiology labs
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Education & OutreachNucera, Diana; Holladay, Steven; Schulz, Burkhard.physiology education
video podCast
digital media content
web based learning modules
student learning
506Viral-induced gene silencing of cellulose synthase and cellulose synthase-like genes in barley reveals a tightly controlled gene network for cell wall biosynthesis
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Cell WallsHeld, Michael; Kessans, Sarah; Brandt, Amanda; Yong, Weidong; Scofield, Steven; Carpita, Nicholas C.Cellulose
cell wall
VIGS
barley
2688Virus-induced gene silencing of P23k in barley leaf reveals morphological changes involved in secondary wall formation
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Cell WallsOikawa, Ai; Rahman, Abidur; Kidou, Shin-ichiro.VIGS
leaf architecture
cell wall
barley
255Virus-Plant Interactions: Molecular Identification of Host Genes Associated with Potyvirus Infection
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Plant-Pathogen InteractionsWang, Aiming; Raghupathy, Mohan; Huang, Tyng-Shyan; Griffiths, Jonathan; Yi, Jinxin; Gagarinova, Alla; Chen, Ling.Soybean mosaic virus
Plum pox virus
plant-virus interaction
Soybean
Arabidopsis thaliana
Peach
Nicotiana benthamiana
microarray
EST
cDNA-AFLP
Yeast-two hybrid
2300virus induced gene silencing on tobacco and phytoremediation
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Environmental PhysiologyChen, Chien-teh; Jan, Fuh-Jyh.VIGS
proline
Phytoremediation
tobacco
2625Vitamin E and Provitamin A Biofortification of Cassava
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Metabolic EngineeringCahoon, Edgar; Solomon, Felix; Hunter, Sarah; Taylor, Nigel.
916Vitis shoots show reversible change in leaf shape along the shoot axis
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Growth and Vegetative DevelopmentCousins, Peter; Prins, Bernard.Vitis
Grape
leaf
leaf shape
286Water-use efficiency in endophyte infected Lolium arundinaceum grasses
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Environmental PhysiologySwarthout, Debbie, J; Harper, Emily; Judd, Stephanie.stomata
water-use efficiency
1253Water channels activity is regulated by endogenous NO3- ions level in tomato and cucumber roots
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Water RelationsGorska, Anna; Ye, Qing; Holbrook, Noel; Zwieniecki, Maciej A..nitrate
water channels
1435Water specific imaging and measurement in a living plant
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Emerging TechnologiesNakanishi, Tomoko; Tanoi, Keitaro; Ohya, Tomoyuki.water imaging
water transport
nondestructive measurement
bean
neutron beam
positron emitter
18F
15O
447Web Services for Plant Data Integration
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Large Scale Technologies and ResourcesTown, Christopher; Haase, Dirk; Wu, Hank; Cheung, Foo; Childs, Kevin; Zhuang, Jun; Avraham, Shuly; Schiltz, Gary; Montoya, Mary; Montoya, Lonny; May, Greg; Stein, Lincoln; Schoof, Heiko; Gessler, Damian.web services
semantic web
data integration
Arabidopsis thaliana
VPIN
LIS
TIGR
812What is the signal linking photosynthesis to stomatal conductance? - A theoretical exploration
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Photosynthesis(Carbon)Zhu, Xin-Guang; Long, Stephen P..Photosynthesis
Computational biology
carbohydrate metabolism
stomatal conductance
2297What puts a twist in twisted dwarf1? – a cytological approach
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Cytoskeleton Structure and DynamicsWeizbauer, Renate A; Schulz, Burkhard.cytoskeleton
cell wall
auxin
immunophilin
1820When arabidopsis meets fescue: allelopathic potential of a non-protein amino acid
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Integrative Plant PhysiologyHuang, Tengfang; Schroeder, Frank.C.; Jander, Georg.fescue
Arabidopsis
allelopathy
m-tyrosine
amino acid
metabolism
1891Whole Transcriptome Analysis Reveals a Role in Brassinosteroid Signaling for LATERAL ORGAN BOUNDARIES in Arabidopsis
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Growth and Vegetative DevelopmentJaganatha, Venkateswari; Husbands, Aman; Bell, Elizabeth M; Girke, Thomas; Springer, Patricia.LOB
Brassinosteroids
1701Xanthomonas XopD TTSS effector is a repressor of hormone-induced transcriptional responses
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Plant-Pathogen InteractionsMudgett, Mary Beth; Kim, Jung-Gun; Keegan, Mark.plant-microbe interaction
Hormone signaling
transcriptional repression

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